Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTPN9P43378 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
PTPN9P43378 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
PTPN9P43378 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTPN9P43378 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PTPN9P43378 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC21.47■■□□□ 1.03
PTPN9P43378 FAM21FP-204ENST00000608637 956 ntBASIC21.47■■□□□ 1.03
PTPN9P43378 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
PTPN9P43378 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC21.47■■□□□ 1.03
PTPN9P43378 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTPN9P43378 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.47■■□□□ 1.03
PTPN9P43378 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PTPN9P43378 AC007225.1-201ENST00000566331 1836 ntBASIC21.46■■□□□ 1.03
PTPN9P43378 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTPN9P43378 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC21.46■■□□□ 1.03
PTPN9P43378 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTPN9P43378 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTPN9P43378 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.46■■□□□ 1.03
PTPN9P43378 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTPN9P43378 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTPN9P43378 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTPN9P43378 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC21.46■■□□□ 1.03
PTPN9P43378 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC21.46■■□□□ 1.03
PTPN9P43378 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
PTPN9P43378 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTPN9P43378 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
PTPN9P43378 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTPN9P43378 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTPN9P43378 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PTPN9P43378 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
PTPN9P43378 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTPN9P43378 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTPN9P43378 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTPN9P43378 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PTPN9P43378 METTL26-203ENST00000397664 604 ntTSL 2 BASIC21.45■■□□□ 1.02
PTPN9P43378 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PTPN9P43378 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC21.45■■□□□ 1.02
PTPN9P43378 CASP6-205ENST00000505486 538 ntTSL 4 BASIC21.45■■□□□ 1.02
PTPN9P43378 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC21.45■■□□□ 1.02
PTPN9P43378 MDK-213ENST00000617138 635 ntTSL 2 BASIC21.45■■□□□ 1.02
PTPN9P43378 AC231657.2-201ENST00000624556 255 ntBASIC21.45■■□□□ 1.02
PTPN9P43378 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.45■■□□□ 1.02
PTPN9P43378 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.45■■□□□ 1.02
PTPN9P43378 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC21.45■■□□□ 1.02
PTPN9P43378 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.45■■□□□ 1.02
PTPN9P43378 AC068338.2-201ENST00000563278 1430 ntBASIC21.45■■□□□ 1.02
PTPN9P43378 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PTPN9P43378 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PTPN9P43378 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PTPN9P43378 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.44■■□□□ 1.02
PTPN9P43378 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PTPN9P43378 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC21.44■■□□□ 1.02
PTPN9P43378 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTPN9P43378 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTPN9P43378 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.44■■□□□ 1.02
PTPN9P43378 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
PTPN9P43378 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.44■■□□□ 1.02
PTPN9P43378 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC21.44■■□□□ 1.02
PTPN9P43378 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTPN9P43378 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
PTPN9P43378 PARP1-210ENST00000629232 477 ntTSL 5 BASIC21.44■■□□□ 1.02
PTPN9P43378 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTPN9P43378 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC21.44■■□□□ 1.02
PTPN9P43378 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PTPN9P43378 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTPN9P43378 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PTPN9P43378 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PTPN9P43378 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTPN9P43378 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PTPN9P43378 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
PTPN9P43378 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTPN9P43378 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
PTPN9P43378 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTPN9P43378 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTPN9P43378 VMO1-204ENST00000441199 741 ntTSL 2 BASIC21.43■■□□□ 1.02
PTPN9P43378 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC21.43■■□□□ 1.02
PTPN9P43378 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.43■■□□□ 1.02
PTPN9P43378 AL137784.2-201ENST00000607332 1000 ntBASIC21.43■■□□□ 1.02
PTPN9P43378 AC016405.3-201ENST00000607710 860 ntBASIC21.43■■□□□ 1.02
PTPN9P43378 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.43■■□□□ 1.02
PTPN9P43378 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTPN9P43378 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC21.43■■□□□ 1.02
PTPN9P43378 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTPN9P43378 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.43■■□□□ 1.02
PTPN9P43378 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC21.43■■□□□ 1.02
PTPN9P43378 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
PTPN9P43378 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTPN9P43378 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC21.43■■□□□ 1.02
PTPN9P43378 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
PTPN9P43378 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
PTPN9P43378 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PTPN9P43378 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
PTPN9P43378 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PTPN9P43378 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PTPN9P43378 BID-203ENST00000399765 1879 ntTSL 2 BASIC21.42■■□□□ 1.02
PTPN9P43378 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PTPN9P43378 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC21.42■■□□□ 1.02
PTPN9P43378 AC007322.1-201ENST00000426983 750 ntBASIC21.42■■□□□ 1.02
PTPN9P43378 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC21.42■■□□□ 1.02
PTPN9P43378 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC21.42■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms