Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CIITAP33076 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC23.31■■□□□ 1.32
CIITAP33076 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CIITAP33076 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
CIITAP33076 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC23.31■■□□□ 1.32
CIITAP33076 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CIITAP33076 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CIITAP33076 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC23.31■■□□□ 1.32
CIITAP33076 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CIITAP33076 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CIITAP33076 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC23.31■■□□□ 1.32
CIITAP33076 AC073210.2-201ENST00000430369 194 ntBASIC23.31■■□□□ 1.32
CIITAP33076 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC23.31■■□□□ 1.32
CIITAP33076 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC23.31■■□□□ 1.32
CIITAP33076 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CIITAP33076 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC23.31■■□□□ 1.32
CIITAP33076 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CIITAP33076 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC23.31■■□□□ 1.32
CIITAP33076 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC23.31■■□□□ 1.32
CIITAP33076 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CIITAP33076 AC121338.2-201ENST00000622535 1744 ntBASIC23.3■■□□□ 1.32
CIITAP33076 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC23.3■■□□□ 1.32
CIITAP33076 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CIITAP33076 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC23.3■■□□□ 1.32
CIITAP33076 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CIITAP33076 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CIITAP33076 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
CIITAP33076 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CIITAP33076 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC23.3■■□□□ 1.32
CIITAP33076 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
CIITAP33076 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CIITAP33076 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
CIITAP33076 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC23.3■■□□□ 1.32
CIITAP33076 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC23.3■■□□□ 1.32
CIITAP33076 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC23.29■■□□□ 1.32
CIITAP33076 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
CIITAP33076 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CIITAP33076 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
CIITAP33076 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
CIITAP33076 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC23.29■■□□□ 1.32
CIITAP33076 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CIITAP33076 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC23.29■■□□□ 1.32
CIITAP33076 ISCU-212ENST00000547005 795 ntTSL 3 BASIC23.29■■□□□ 1.32
CIITAP33076 AC092118.2-201ENST00000613495 667 ntBASIC23.29■■□□□ 1.32
CIITAP33076 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC23.29■■□□□ 1.32
CIITAP33076 PFKL-212ENST00000628044 129 ntTSL 3 BASIC23.29■■□□□ 1.32
CIITAP33076 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CIITAP33076 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC23.28■■□□□ 1.32
CIITAP33076 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CIITAP33076 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CIITAP33076 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CIITAP33076 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CIITAP33076 AL355802.2-201ENST00000402069 882 ntBASIC23.28■■□□□ 1.32
CIITAP33076 AL355472.2-201ENST00000422958 438 ntBASIC23.28■■□□□ 1.32
CIITAP33076 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC23.28■■□□□ 1.32
CIITAP33076 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC23.28■■□□□ 1.32
CIITAP33076 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC23.28■■□□□ 1.32
CIITAP33076 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC23.28■■□□□ 1.32
CIITAP33076 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
CIITAP33076 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC23.28■■□□□ 1.32
CIITAP33076 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
CIITAP33076 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CIITAP33076 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CIITAP33076 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC23.28■■□□□ 1.32
CIITAP33076 AC007375.3-201ENST00000600936 2314 ntBASIC23.27■■□□□ 1.32
CIITAP33076 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC23.27■■□□□ 1.32
CIITAP33076 AC027702.1-201ENST00000563810 1770 ntBASIC23.27■■□□□ 1.32
CIITAP33076 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC23.27■■□□□ 1.32
CIITAP33076 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
CIITAP33076 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC23.27■■□□□ 1.32
CIITAP33076 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CIITAP33076 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
CIITAP33076 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC23.27■■□□□ 1.32
CIITAP33076 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CIITAP33076 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC23.27■■□□□ 1.32
CIITAP33076 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CIITAP33076 BX276092.2-201ENST00000417668 665 ntBASIC23.27■■□□□ 1.32
CIITAP33076 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
CIITAP33076 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC23.27■■□□□ 1.32
CIITAP33076 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CIITAP33076 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC23.27■■□□□ 1.32
CIITAP33076 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
CIITAP33076 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CIITAP33076 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
CIITAP33076 GCK-205ENST00000437084 1385 ntTSL 5 BASIC23.27■■□□□ 1.31
CIITAP33076 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CIITAP33076 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CIITAP33076 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
CIITAP33076 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CIITAP33076 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CIITAP33076 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CIITAP33076 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
CIITAP33076 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CIITAP33076 KRT18P68-201ENST00000392293 1000 ntBASIC23.26■■□□□ 1.31
CIITAP33076 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
CIITAP33076 MIR4758-201ENST00000577688 71 ntBASIC23.26■■□□□ 1.31
CIITAP33076 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC23.26■■□□□ 1.31
CIITAP33076 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CIITAP33076 PLK5-205ENST00000642079 1969 ntBASIC23.26■■□□□ 1.31
CIITAP33076 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms