Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL6A2P12110 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
COL6A2P12110 AC079140.4-201ENST00000507448 529 ntBASIC20.37■□□□□ 0.85
COL6A2P12110 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.37■□□□□ 0.85
COL6A2P12110 AC138907.5-202ENST00000569484 235 ntBASIC20.37■□□□□ 0.85
COL6A2P12110 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.37■□□□□ 0.85
COL6A2P12110 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
COL6A2P12110 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.37■□□□□ 0.85
COL6A2P12110 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL6A2P12110 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL6A2P12110 KRT16P2-201ENST00000414673 1423 ntBASIC20.36■□□□□ 0.85
COL6A2P12110 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.36■□□□□ 0.85
COL6A2P12110 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.36■□□□□ 0.85
COL6A2P12110 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL6A2P12110 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.36■□□□□ 0.85
COL6A2P12110 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.36■□□□□ 0.85
COL6A2P12110 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL6A2P12110 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.36■□□□□ 0.85
COL6A2P12110 RARRES2P11-201ENST00000635158 484 ntBASIC20.36■□□□□ 0.85
COL6A2P12110 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL6A2P12110 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.36■□□□□ 0.85
COL6A2P12110 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
COL6A2P12110 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL6A2P12110 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL6A2P12110 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL6A2P12110 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL6A2P12110 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
COL6A2P12110 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL6A2P12110 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.35■□□□□ 0.85
COL6A2P12110 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
COL6A2P12110 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL6A2P12110 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.35■□□□□ 0.85
COL6A2P12110 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.35■□□□□ 0.85
COL6A2P12110 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.35■□□□□ 0.85
COL6A2P12110 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
COL6A2P12110 AL512408.1-201ENST00000569378 2000 ntBASIC20.35■□□□□ 0.85
COL6A2P12110 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
COL6A2P12110 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
COL6A2P12110 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL6A2P12110 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL6A2P12110 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.34■□□□□ 0.85
COL6A2P12110 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.34■□□□□ 0.85
COL6A2P12110 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.34■□□□□ 0.85
COL6A2P12110 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A2P12110 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A2P12110 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
COL6A2P12110 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A2P12110 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A2P12110 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A2P12110 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A2P12110 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.34■□□□□ 0.85
COL6A2P12110 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
COL6A2P12110 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A2P12110 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A2P12110 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
COL6A2P12110 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A2P12110 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A2P12110 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.34■□□□□ 0.85
COL6A2P12110 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A2P12110 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A2P12110 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A2P12110 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A2P12110 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
COL6A2P12110 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A2P12110 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
COL6A2P12110 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL6A2P12110 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.33■□□□□ 0.85
COL6A2P12110 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL6A2P12110 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL6A2P12110 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.33■□□□□ 0.85
COL6A2P12110 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.33■□□□□ 0.85
COL6A2P12110 AC245052.3-201ENST00000450182 901 ntBASIC20.33■□□□□ 0.85
COL6A2P12110 AC120498.10-201ENST00000621827 505 ntBASIC20.33■□□□□ 0.85
COL6A2P12110 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL6A2P12110 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL6A2P12110 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
COL6A2P12110 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.33■□□□□ 0.84
COL6A2P12110 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
COL6A2P12110 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL6A2P12110 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A2P12110 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.32■□□□□ 0.84
COL6A2P12110 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.32■□□□□ 0.84
COL6A2P12110 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A2P12110 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
COL6A2P12110 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.32■□□□□ 0.84
COL6A2P12110 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.32■□□□□ 0.84
COL6A2P12110 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.32■□□□□ 0.84
COL6A2P12110 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A2P12110 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A2P12110 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A2P12110 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.32■□□□□ 0.84
COL6A2P12110 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A2P12110 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.32■□□□□ 0.84
COL6A2P12110 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.32■□□□□ 0.84
COL6A2P12110 AC092720.2-201ENST00000602388 1665 ntBASIC20.32■□□□□ 0.84
COL6A2P12110 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.32■□□□□ 0.84
COL6A2P12110 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A2P12110 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.32■□□□□ 0.84
COL6A2P12110 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A2P12110 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms