Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC097658.1-201ENST00000475555 843 ntBASIC18.67■□□□□ 0.58
HOXD4P09016 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.67■□□□□ 0.58
HOXD4P09016 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.67■□□□□ 0.58
HOXD4P09016 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HOXD4P09016 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
HOXD4P09016 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC18.67■□□□□ 0.58
HOXD4P09016 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.67■□□□□ 0.58
HOXD4P09016 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HOXD4P09016 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXD4P09016 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXD4P09016 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.67■□□□□ 0.58
HOXD4P09016 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
HOXD4P09016 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXD4P09016 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HOXD4P09016 AC010980.2-201ENST00000587099 1412 ntBASIC18.66■□□□□ 0.58
HOXD4P09016 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC18.66■□□□□ 0.58
HOXD4P09016 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXD4P09016 POU5F1P3-201ENST00000428824 1078 ntBASIC18.66■□□□□ 0.58
HOXD4P09016 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
HOXD4P09016 AC093787.1-201ENST00000450396 207 ntBASIC18.66■□□□□ 0.58
HOXD4P09016 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HOXD4P09016 AC098934.4-201ENST00000564127 592 ntBASIC18.66■□□□□ 0.58
HOXD4P09016 AC100791.3-201ENST00000617619 330 ntBASIC18.66■□□□□ 0.58
HOXD4P09016 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HOXD4P09016 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXD4P09016 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXD4P09016 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
HOXD4P09016 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC18.66■□□□□ 0.58
HOXD4P09016 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXD4P09016 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.66■□□□□ 0.58
HOXD4P09016 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HOXD4P09016 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HOXD4P09016 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXD4P09016 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXD4P09016 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
HOXD4P09016 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HOXD4P09016 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.65■□□□□ 0.58
HOXD4P09016 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HOXD4P09016 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.65■□□□□ 0.58
HOXD4P09016 CASP6-205ENST00000505486 538 ntTSL 4 BASIC18.65■□□□□ 0.58
HOXD4P09016 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
HOXD4P09016 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.65■□□□□ 0.58
HOXD4P09016 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.65■□□□□ 0.58
HOXD4P09016 FAM21FP-204ENST00000608637 956 ntBASIC18.65■□□□□ 0.58
HOXD4P09016 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC18.65■□□□□ 0.58
HOXD4P09016 ITM2C-210ENST00000620962 501 ntBASIC18.65■□□□□ 0.58
HOXD4P09016 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXD4P09016 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.65■□□□□ 0.58
HOXD4P09016 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXD4P09016 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HOXD4P09016 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.65■□□□□ 0.58
HOXD4P09016 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXD4P09016 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
HOXD4P09016 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
HOXD4P09016 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HOXD4P09016 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
HOXD4P09016 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.64■□□□□ 0.57
HOXD4P09016 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
HOXD4P09016 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.64■□□□□ 0.57
HOXD4P09016 AC008687.6-201ENST00000596318 630 ntBASIC18.64■□□□□ 0.57
HOXD4P09016 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HOXD4P09016 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.64■□□□□ 0.57
HOXD4P09016 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
HOXD4P09016 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HOXD4P09016 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HOXD4P09016 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HOXD4P09016 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HOXD4P09016 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.64■□□□□ 0.57
HOXD4P09016 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
HOXD4P09016 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC18.63■□□□□ 0.57
HOXD4P09016 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC18.63■□□□□ 0.57
HOXD4P09016 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HOXD4P09016 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HOXD4P09016 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC18.63■□□□□ 0.57
HOXD4P09016 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.63■□□□□ 0.57
HOXD4P09016 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HOXD4P09016 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.63■□□□□ 0.57
HOXD4P09016 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.63■□□□□ 0.57
HOXD4P09016 AC093827.2-201ENST00000512654 315 ntBASIC18.63■□□□□ 0.57
HOXD4P09016 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC18.63■□□□□ 0.57
HOXD4P09016 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HOXD4P09016 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HOXD4P09016 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HOXD4P09016 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
HOXD4P09016 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
HOXD4P09016 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HOXD4P09016 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXD4P09016 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXD4P09016 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
HOXD4P09016 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC18.62■□□□□ 0.57
HOXD4P09016 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXD4P09016 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXD4P09016 KRT18P29-201ENST00000397031 1267 ntBASIC18.62■□□□□ 0.57
HOXD4P09016 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
HOXD4P09016 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.62■□□□□ 0.57
HOXD4P09016 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXD4P09016 RNA5SP413-201ENST00000516373 109 ntBASIC18.62■□□□□ 0.57
HOXD4P09016 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.62■□□□□ 0.57
HOXD4P09016 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.62■□□□□ 0.57
HOXD4P09016 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms