Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.1■□□□□ 0.97
CBX4O00257 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
CBX4O00257 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CBX4O00257 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
CBX4O00257 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CBX4O00257 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CBX4O00257 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
CBX4O00257 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CBX4O00257 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CBX4O00257 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CBX4O00257 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CBX4O00257 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CBX4O00257 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CBX4O00257 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.09■□□□□ 0.97
CBX4O00257 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CBX4O00257 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.09■□□□□ 0.97
CBX4O00257 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CBX4O00257 SLC29A4P1-201ENST00000398760 971 ntBASIC21.09■□□□□ 0.97
CBX4O00257 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC21.09■□□□□ 0.97
CBX4O00257 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC21.09■□□□□ 0.97
CBX4O00257 FAM21FP-204ENST00000608637 956 ntBASIC21.09■□□□□ 0.97
CBX4O00257 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CBX4O00257 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CBX4O00257 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CBX4O00257 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CBX4O00257 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CBX4O00257 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.09■□□□□ 0.97
CBX4O00257 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC21.09■□□□□ 0.97
CBX4O00257 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CBX4O00257 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CBX4O00257 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CBX4O00257 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
CBX4O00257 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
CBX4O00257 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CBX4O00257 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.97
CBX4O00257 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CBX4O00257 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.08■□□□□ 0.97
CBX4O00257 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
CBX4O00257 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
CBX4O00257 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CBX4O00257 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21.08■□□□□ 0.97
CBX4O00257 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC21.08■□□□□ 0.97
CBX4O00257 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.08■□□□□ 0.97
CBX4O00257 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
CBX4O00257 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CBX4O00257 MKRN4P-201ENST00000444706 1521 ntBASIC21.08■□□□□ 0.96
CBX4O00257 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CBX4O00257 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CBX4O00257 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CBX4O00257 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CBX4O00257 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CBX4O00257 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CBX4O00257 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
CBX4O00257 GUSBP6-202ENST00000438529 1198 ntBASIC21.07■□□□□ 0.96
CBX4O00257 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CBX4O00257 AC142086.2-201ENST00000569753 217 ntBASIC21.07■□□□□ 0.96
CBX4O00257 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
CBX4O00257 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CBX4O00257 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.07■□□□□ 0.96
CBX4O00257 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.07■□□□□ 0.96
CBX4O00257 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CBX4O00257 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CBX4O00257 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CBX4O00257 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CBX4O00257 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CBX4O00257 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CBX4O00257 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CBX4O00257 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CBX4O00257 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC21.06■□□□□ 0.96
CBX4O00257 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
CBX4O00257 AL512625.2-201ENST00000417533 625 ntBASIC21.06■□□□□ 0.96
CBX4O00257 VMO1-204ENST00000441199 741 ntTSL 2 BASIC21.06■□□□□ 0.96
CBX4O00257 KLF13-207ENST00000560473 489 ntTSL 3 BASIC21.06■□□□□ 0.96
CBX4O00257 AL138781.1-201ENST00000566567 1274 ntBASIC21.06■□□□□ 0.96
CBX4O00257 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.06■□□□□ 0.96
CBX4O00257 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CBX4O00257 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CBX4O00257 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
CBX4O00257 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.05■□□□□ 0.96
CBX4O00257 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CBX4O00257 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CBX4O00257 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC21.05■□□□□ 0.96
CBX4O00257 SAPCD2P1-201ENST00000395413 1184 ntBASIC21.05■□□□□ 0.96
CBX4O00257 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CBX4O00257 PFKL-212ENST00000628044 129 ntTSL 3 BASIC21.05■□□□□ 0.96
CBX4O00257 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CBX4O00257 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.05■□□□□ 0.96
CBX4O00257 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CBX4O00257 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CBX4O00257 AC010980.2-201ENST00000587099 1412 ntBASIC21.04■□□□□ 0.96
CBX4O00257 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
CBX4O00257 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CBX4O00257 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
CBX4O00257 AC007375.3-201ENST00000600936 2314 ntBASIC21.04■□□□□ 0.96
CBX4O00257 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CBX4O00257 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CBX4O00257 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
CBX4O00257 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC21.04■□□□□ 0.96
CBX4O00257 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.04■□□□□ 0.96
CBX4O00257 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms