Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
LRRC53A6NM62 RARRES2P11-201ENST00000635158 484 ntBASIC22.24■■□□□ 1.15
LRRC53A6NM62 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
LRRC53A6NM62 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LRRC53A6NM62 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC22.24■■□□□ 1.15
LRRC53A6NM62 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
LRRC53A6NM62 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
LRRC53A6NM62 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
LRRC53A6NM62 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LRRC53A6NM62 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LRRC53A6NM62 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
LRRC53A6NM62 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
LRRC53A6NM62 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC22.23■■□□□ 1.15
LRRC53A6NM62 AL162377.1-201ENST00000618844 1793 ntBASIC22.23■■□□□ 1.15
LRRC53A6NM62 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LRRC53A6NM62 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LRRC53A6NM62 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
LRRC53A6NM62 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
LRRC53A6NM62 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LRRC53A6NM62 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LRRC53A6NM62 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
LRRC53A6NM62 AC105265.2-201ENST00000467189 838 ntBASIC22.23■■□□□ 1.15
LRRC53A6NM62 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LRRC53A6NM62 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LRRC53A6NM62 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC22.23■■□□□ 1.15
LRRC53A6NM62 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC22.23■■□□□ 1.15
LRRC53A6NM62 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
LRRC53A6NM62 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
LRRC53A6NM62 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC22.23■■□□□ 1.15
LRRC53A6NM62 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC22.23■■□□□ 1.15
LRRC53A6NM62 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LRRC53A6NM62 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC22.23■■□□□ 1.15
LRRC53A6NM62 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC22.22■■□□□ 1.15
LRRC53A6NM62 AL121603.2-201ENST00000557373 2117 ntBASIC22.22■■□□□ 1.15
LRRC53A6NM62 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC22.22■■□□□ 1.15
LRRC53A6NM62 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC22.22■■□□□ 1.15
LRRC53A6NM62 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
LRRC53A6NM62 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
LRRC53A6NM62 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC22.22■■□□□ 1.15
LRRC53A6NM62 IRS3P-201ENST00000223076 1006 ntBASIC22.22■■□□□ 1.15
LRRC53A6NM62 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
LRRC53A6NM62 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC22.22■■□□□ 1.15
LRRC53A6NM62 AC138907.5-202ENST00000569484 235 ntBASIC22.22■■□□□ 1.15
LRRC53A6NM62 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC22.22■■□□□ 1.15
LRRC53A6NM62 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC22.22■■□□□ 1.15
LRRC53A6NM62 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC22.22■■□□□ 1.15
LRRC53A6NM62 ME2-218ENST00000640965 2476 ntTSL 5 BASIC22.22■■□□□ 1.15
LRRC53A6NM62 STAC-204ENST00000457375 1366 ntTSL 2 BASIC22.22■■□□□ 1.15
LRRC53A6NM62 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
LRRC53A6NM62 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC22.22■■□□□ 1.15
LRRC53A6NM62 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC22.21■■□□□ 1.15
LRRC53A6NM62 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
LRRC53A6NM62 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
LRRC53A6NM62 AC112907.3-201ENST00000577781 2400 ntBASIC22.21■■□□□ 1.15
LRRC53A6NM62 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LRRC53A6NM62 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
LRRC53A6NM62 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC22.21■■□□□ 1.15
LRRC53A6NM62 NAA20-201ENST00000310450 920 ntTSL 2 BASIC22.21■■□□□ 1.15
LRRC53A6NM62 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
LRRC53A6NM62 AC027612.3-201ENST00000413684 1047 ntBASIC22.21■■□□□ 1.15
LRRC53A6NM62 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
LRRC53A6NM62 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LRRC53A6NM62 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
LRRC53A6NM62 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
LRRC53A6NM62 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LRRC53A6NM62 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC22.2■■□□□ 1.15
LRRC53A6NM62 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
LRRC53A6NM62 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
LRRC53A6NM62 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC22.2■■□□□ 1.14
LRRC53A6NM62 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LRRC53A6NM62 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
LRRC53A6NM62 AC005837.3-201ENST00000612163 286 ntBASIC22.2■■□□□ 1.14
LRRC53A6NM62 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
LRRC53A6NM62 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC22.2■■□□□ 1.14
LRRC53A6NM62 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
LRRC53A6NM62 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
LRRC53A6NM62 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC22.2■■□□□ 1.14
LRRC53A6NM62 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRRC53A6NM62 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC22.19■■□□□ 1.14
LRRC53A6NM62 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRRC53A6NM62 AFG3L1P-217ENST00000557444 2447 ntBASIC22.19■■□□□ 1.14
LRRC53A6NM62 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC22.19■■□□□ 1.14
LRRC53A6NM62 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC22.19■■□□□ 1.14
LRRC53A6NM62 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC22.19■■□□□ 1.14
LRRC53A6NM62 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRRC53A6NM62 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRRC53A6NM62 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
LRRC53A6NM62 KRT16P2-201ENST00000414673 1423 ntBASIC22.19■■□□□ 1.14
LRRC53A6NM62 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC22.19■■□□□ 1.14
LRRC53A6NM62 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRRC53A6NM62 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
LRRC53A6NM62 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRRC53A6NM62 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
LRRC53A6NM62 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRRC53A6NM62 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
LRRC53A6NM62 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRRC53A6NM62 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC22.19■■□□□ 1.14
LRRC53A6NM62 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC22.19■■□□□ 1.14
LRRC53A6NM62 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
LRRC53A6NM62 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms