Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.93■□□□□ 0.46
TRAV1-2A0A0B4J238 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAV1-2A0A0B4J238 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAV1-2A0A0B4J238 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 PXK-203ENST00000383715 1756 ntTSL 5 BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 DUX4L19-201ENST00000557448 1267 ntBASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 AC011298.3-201ENST00000615796 283 ntBASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.92■□□□□ 0.46
TRAV1-2A0A0B4J238 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC17.91■□□□□ 0.46
TRAV1-2A0A0B4J238 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV1-2A0A0B4J238 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV1-2A0A0B4J238 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC17.91■□□□□ 0.46
TRAV1-2A0A0B4J238 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV1-2A0A0B4J238 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV1-2A0A0B4J238 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV1-2A0A0B4J238 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
TRAV1-2A0A0B4J238 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV1-2A0A0B4J238 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV1-2A0A0B4J238 FXN-202ENST00000396364 980 ntTSL 5 BASIC17.91■□□□□ 0.46
TRAV1-2A0A0B4J238 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC17.91■□□□□ 0.46
TRAV1-2A0A0B4J238 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
TRAV1-2A0A0B4J238 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC17.91■□□□□ 0.46
TRAV1-2A0A0B4J238 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV1-2A0A0B4J238 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV1-2A0A0B4J238 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC17.91■□□□□ 0.46
TRAV1-2A0A0B4J238 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV1-2A0A0B4J238 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV1-2A0A0B4J238 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
TRAV1-2A0A0B4J238 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.91■□□□□ 0.46
TRAV1-2A0A0B4J238 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
TRAV1-2A0A0B4J238 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV1-2A0A0B4J238 STAC-204ENST00000457375 1366 ntTSL 2 BASIC17.91■□□□□ 0.46
TRAV1-2A0A0B4J238 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV1-2A0A0B4J238 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
TRAV1-2A0A0B4J238 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV1-2A0A0B4J238 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV1-2A0A0B4J238 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
TRAV1-2A0A0B4J238 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC17.9■□□□□ 0.46
TRAV1-2A0A0B4J238 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV1-2A0A0B4J238 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC17.9■□□□□ 0.46
TRAV1-2A0A0B4J238 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
TRAV1-2A0A0B4J238 RNF146-206ENST00000480444 843 ntTSL 2 BASIC17.9■□□□□ 0.46
TRAV1-2A0A0B4J238 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC17.9■□□□□ 0.46
TRAV1-2A0A0B4J238 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV1-2A0A0B4J238 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV1-2A0A0B4J238 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17.9■□□□□ 0.46
TRAV1-2A0A0B4J238 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV1-2A0A0B4J238 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
TRAV1-2A0A0B4J238 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
TRAV1-2A0A0B4J238 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV1-2A0A0B4J238 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV1-2A0A0B4J238 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV1-2A0A0B4J238 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC17.9■□□□□ 0.46
TRAV1-2A0A0B4J238 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
TRAV1-2A0A0B4J238 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV1-2A0A0B4J238 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
TRAV1-2A0A0B4J238 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV1-2A0A0B4J238 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
TRAV1-2A0A0B4J238 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC17.89■□□□□ 0.45
TRAV1-2A0A0B4J238 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC17.89■□□□□ 0.45
TRAV1-2A0A0B4J238 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV1-2A0A0B4J238 SNX3-202ENST00000349379 890 ntTSL 2 BASIC17.89■□□□□ 0.45
TRAV1-2A0A0B4J238 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
TRAV1-2A0A0B4J238 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC17.89■□□□□ 0.45
TRAV1-2A0A0B4J238 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC17.89■□□□□ 0.45
TRAV1-2A0A0B4J238 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC17.89■□□□□ 0.45
TRAV1-2A0A0B4J238 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
TRAV1-2A0A0B4J238 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV1-2A0A0B4J238 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC17.89■□□□□ 0.45
TRAV1-2A0A0B4J238 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC17.89■□□□□ 0.45
TRAV1-2A0A0B4J238 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV1-2A0A0B4J238 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV1-2A0A0B4J238 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.88■□□□□ 0.45
TRAV1-2A0A0B4J238 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
TRAV1-2A0A0B4J238 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAV1-2A0A0B4J238 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAV1-2A0A0B4J238 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms