Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PCDHGA1Q9Y5H4 AC012676.1-201ENST00000574705 1949 ntBASIC19.93■□□□□ 0.78
PCDHGA1Q9Y5H4 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
PCDHGA1Q9Y5H4 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC19.93■□□□□ 0.78
PCDHGA1Q9Y5H4 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
PCDHGA1Q9Y5H4 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
PCDHGA1Q9Y5H4 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.92■□□□□ 0.78
PCDHGA1Q9Y5H4 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC19.92■□□□□ 0.78
PCDHGA1Q9Y5H4 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHGA1Q9Y5H4 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHGA1Q9Y5H4 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
PCDHGA1Q9Y5H4 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHGA1Q9Y5H4 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHGA1Q9Y5H4 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHGA1Q9Y5H4 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHGA1Q9Y5H4 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHGA1Q9Y5H4 AC133681.1-201ENST00000465482 601 ntBASIC19.92■□□□□ 0.78
PCDHGA1Q9Y5H4 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHGA1Q9Y5H4 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19.92■□□□□ 0.78
PCDHGA1Q9Y5H4 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.92■□□□□ 0.78
PCDHGA1Q9Y5H4 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.92■□□□□ 0.78
PCDHGA1Q9Y5H4 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
PCDHGA1Q9Y5H4 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHGA1Q9Y5H4 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.92■□□□□ 0.78
PCDHGA1Q9Y5H4 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.92■□□□□ 0.78
PCDHGA1Q9Y5H4 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.92■□□□□ 0.78
PCDHGA1Q9Y5H4 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
PCDHGA1Q9Y5H4 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHGA1Q9Y5H4 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHGA1Q9Y5H4 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHGA1Q9Y5H4 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHGA1Q9Y5H4 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHGA1Q9Y5H4 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHGA1Q9Y5H4 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHGA1Q9Y5H4 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
PCDHGA1Q9Y5H4 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHGA1Q9Y5H4 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHGA1Q9Y5H4 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.91■□□□□ 0.78
PCDHGA1Q9Y5H4 AC010331.1-201ENST00000611423 582 ntBASIC19.91■□□□□ 0.78
PCDHGA1Q9Y5H4 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHGA1Q9Y5H4 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHGA1Q9Y5H4 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHGA1Q9Y5H4 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.91■□□□□ 0.78
PCDHGA1Q9Y5H4 AL135905.2-201ENST00000584934 1404 ntBASIC19.91■□□□□ 0.78
PCDHGA1Q9Y5H4 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHGA1Q9Y5H4 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHGA1Q9Y5H4 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
PCDHGA1Q9Y5H4 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHGA1Q9Y5H4 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHGA1Q9Y5H4 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHGA1Q9Y5H4 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHGA1Q9Y5H4 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHGA1Q9Y5H4 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHGA1Q9Y5H4 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
PCDHGA1Q9Y5H4 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHGA1Q9Y5H4 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHGA1Q9Y5H4 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHGA1Q9Y5H4 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHGA1Q9Y5H4 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.9■□□□□ 0.78
PCDHGA1Q9Y5H4 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.9■□□□□ 0.78
PCDHGA1Q9Y5H4 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.9■□□□□ 0.78
PCDHGA1Q9Y5H4 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHGA1Q9Y5H4 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC19.9■□□□□ 0.78
PCDHGA1Q9Y5H4 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHGA1Q9Y5H4 MTDHP1-201ENST00000605323 784 ntBASIC19.9■□□□□ 0.78
PCDHGA1Q9Y5H4 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHGA1Q9Y5H4 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.9■□□□□ 0.78
PCDHGA1Q9Y5H4 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHGA1Q9Y5H4 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.9■□□□□ 0.78
PCDHGA1Q9Y5H4 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHGA1Q9Y5H4 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.9■□□□□ 0.78
PCDHGA1Q9Y5H4 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.78
PCDHGA1Q9Y5H4 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
PCDHGA1Q9Y5H4 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PCDHGA1Q9Y5H4 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
PCDHGA1Q9Y5H4 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
PCDHGA1Q9Y5H4 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PCDHGA1Q9Y5H4 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.89■□□□□ 0.77
PCDHGA1Q9Y5H4 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PCDHGA1Q9Y5H4 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
PCDHGA1Q9Y5H4 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.89■□□□□ 0.77
PCDHGA1Q9Y5H4 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PCDHGA1Q9Y5H4 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
PCDHGA1Q9Y5H4 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.89■□□□□ 0.77
PCDHGA1Q9Y5H4 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.89■□□□□ 0.77
PCDHGA1Q9Y5H4 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PCDHGA1Q9Y5H4 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
PCDHGA1Q9Y5H4 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.89■□□□□ 0.77
PCDHGA1Q9Y5H4 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC19.88■□□□□ 0.77
PCDHGA1Q9Y5H4 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.88■□□□□ 0.77
PCDHGA1Q9Y5H4 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.88■□□□□ 0.77
PCDHGA1Q9Y5H4 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PCDHGA1Q9Y5H4 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCDHGA1Q9Y5H4 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCDHGA1Q9Y5H4 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PCDHGA1Q9Y5H4 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCDHGA1Q9Y5H4 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
PCDHGA1Q9Y5H4 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC19.88■□□□□ 0.77
PCDHGA1Q9Y5H4 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PCDHGA1Q9Y5H4 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms