Protein–RNA interactions for Protein: Q9UQD0

SCN8A, Sodium channel protein type 8 subunit alpha, humanhuman

Predictions only

Length 1,980 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN8AQ9UQD0 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.58■□□□□ 0.89
SCN8AQ9UQD0 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SCN8AQ9UQD0 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
SCN8AQ9UQD0 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.89
SCN8AQ9UQD0 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
SCN8AQ9UQD0 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.58■□□□□ 0.88
SCN8AQ9UQD0 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.58■□□□□ 0.88
SCN8AQ9UQD0 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
SCN8AQ9UQD0 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.58■□□□□ 0.88
SCN8AQ9UQD0 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.58■□□□□ 0.88
SCN8AQ9UQD0 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.88
SCN8AQ9UQD0 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SCN8AQ9UQD0 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SCN8AQ9UQD0 AC006128.1-201ENST00000624704 1661 ntBASIC20.58■□□□□ 0.88
SCN8AQ9UQD0 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCN8AQ9UQD0 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCN8AQ9UQD0 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SCN8AQ9UQD0 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.57■□□□□ 0.88
SCN8AQ9UQD0 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCN8AQ9UQD0 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCN8AQ9UQD0 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCN8AQ9UQD0 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.57■□□□□ 0.88
SCN8AQ9UQD0 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.57■□□□□ 0.88
SCN8AQ9UQD0 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCN8AQ9UQD0 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.57■□□□□ 0.88
SCN8AQ9UQD0 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCN8AQ9UQD0 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
SCN8AQ9UQD0 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCN8AQ9UQD0 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCN8AQ9UQD0 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCN8AQ9UQD0 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCN8AQ9UQD0 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCN8AQ9UQD0 AL137060.1-201ENST00000618151 2648 ntBASIC20.56■□□□□ 0.88
SCN8AQ9UQD0 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
SCN8AQ9UQD0 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.55■□□□□ 0.88
SCN8AQ9UQD0 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.55■□□□□ 0.88
SCN8AQ9UQD0 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.55■□□□□ 0.88
SCN8AQ9UQD0 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCN8AQ9UQD0 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.55■□□□□ 0.88
SCN8AQ9UQD0 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SCN8AQ9UQD0 AC007322.1-201ENST00000426983 750 ntBASIC20.55■□□□□ 0.88
SCN8AQ9UQD0 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.55■□□□□ 0.88
SCN8AQ9UQD0 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20.55■□□□□ 0.88
SCN8AQ9UQD0 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.55■□□□□ 0.88
SCN8AQ9UQD0 AL356652.1-201ENST00000615962 565 ntBASIC20.55■□□□□ 0.88
SCN8AQ9UQD0 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SCN8AQ9UQD0 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.55■□□□□ 0.88
SCN8AQ9UQD0 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.54■□□□□ 0.88
SCN8AQ9UQD0 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.54■□□□□ 0.88
SCN8AQ9UQD0 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
SCN8AQ9UQD0 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.54■□□□□ 0.88
SCN8AQ9UQD0 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.54■□□□□ 0.88
SCN8AQ9UQD0 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCN8AQ9UQD0 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.54■□□□□ 0.88
SCN8AQ9UQD0 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SCN8AQ9UQD0 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCN8AQ9UQD0 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCN8AQ9UQD0 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCN8AQ9UQD0 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SCN8AQ9UQD0 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SCN8AQ9UQD0 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCN8AQ9UQD0 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC20.54■□□□□ 0.88
SCN8AQ9UQD0 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SCN8AQ9UQD0 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
SCN8AQ9UQD0 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.53■□□□□ 0.88
SCN8AQ9UQD0 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCN8AQ9UQD0 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCN8AQ9UQD0 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.53■□□□□ 0.88
SCN8AQ9UQD0 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCN8AQ9UQD0 MIR4651-201ENST00000582622 73 ntBASIC20.53■□□□□ 0.88
SCN8AQ9UQD0 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCN8AQ9UQD0 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.53■□□□□ 0.88
SCN8AQ9UQD0 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCN8AQ9UQD0 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.53■□□□□ 0.88
SCN8AQ9UQD0 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCN8AQ9UQD0 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCN8AQ9UQD0 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.53■□□□□ 0.88
SCN8AQ9UQD0 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.53■□□□□ 0.88
SCN8AQ9UQD0 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SCN8AQ9UQD0 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC20.52■□□□□ 0.88
SCN8AQ9UQD0 AF201337.1-201ENST00000520239 748 ntBASIC20.52■□□□□ 0.88
SCN8AQ9UQD0 KRT18P6-201ENST00000555540 1265 ntBASIC20.52■□□□□ 0.88
SCN8AQ9UQD0 AL121832.2-201ENST00000610979 668 ntBASIC20.52■□□□□ 0.88
SCN8AQ9UQD0 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.52■□□□□ 0.88
SCN8AQ9UQD0 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.52■□□□□ 0.88
SCN8AQ9UQD0 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SCN8AQ9UQD0 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.52■□□□□ 0.88
SCN8AQ9UQD0 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.52■□□□□ 0.87
SCN8AQ9UQD0 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SCN8AQ9UQD0 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.52■□□□□ 0.87
SCN8AQ9UQD0 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.52■□□□□ 0.87
SCN8AQ9UQD0 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.52■□□□□ 0.87
SCN8AQ9UQD0 FAM21FP-204ENST00000608637 956 ntBASIC20.52■□□□□ 0.87
SCN8AQ9UQD0 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
SCN8AQ9UQD0 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SCN8AQ9UQD0 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCN8AQ9UQD0 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCN8AQ9UQD0 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SCN8AQ9UQD0 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.51■□□□□ 0.87
SCN8AQ9UQD0 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms