Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS29Q9UBQ0 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS29Q9UBQ0 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.8■□□□□ 0.76
VPS29Q9UBQ0 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
VPS29Q9UBQ0 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS29Q9UBQ0 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS29Q9UBQ0 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS29Q9UBQ0 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS29Q9UBQ0 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS29Q9UBQ0 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.8■□□□□ 0.76
VPS29Q9UBQ0 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS29Q9UBQ0 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS29Q9UBQ0 KRT18P20-201ENST00000548986 1279 ntBASIC19.8■□□□□ 0.76
VPS29Q9UBQ0 SLC7A5P2-201ENST00000553010 536 ntBASIC19.8■□□□□ 0.76
VPS29Q9UBQ0 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS29Q9UBQ0 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS29Q9UBQ0 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
VPS29Q9UBQ0 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS29Q9UBQ0 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS29Q9UBQ0 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS29Q9UBQ0 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS29Q9UBQ0 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS29Q9UBQ0 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
VPS29Q9UBQ0 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS29Q9UBQ0 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS29Q9UBQ0 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS29Q9UBQ0 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS29Q9UBQ0 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
VPS29Q9UBQ0 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.79■□□□□ 0.76
VPS29Q9UBQ0 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS29Q9UBQ0 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.79■□□□□ 0.76
VPS29Q9UBQ0 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS29Q9UBQ0 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS29Q9UBQ0 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS29Q9UBQ0 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS29Q9UBQ0 AP005212.1-201ENST00000581547 1997 ntBASIC19.79■□□□□ 0.76
VPS29Q9UBQ0 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS29Q9UBQ0 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.79■□□□□ 0.76
VPS29Q9UBQ0 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 AC004854.2-201ENST00000608450 1441 ntBASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 GABARAPL3-202ENST00000624044 1851 ntBASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 AC073314.1-201ENST00000568729 2216 ntBASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.78■□□□□ 0.76
VPS29Q9UBQ0 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS29Q9UBQ0 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
VPS29Q9UBQ0 FP700111.2-201ENST00000619190 1892 ntBASIC19.77■□□□□ 0.76
VPS29Q9UBQ0 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
VPS29Q9UBQ0 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
VPS29Q9UBQ0 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS29Q9UBQ0 AC073130.3-201ENST00000624389 2278 ntBASIC19.77■□□□□ 0.76
VPS29Q9UBQ0 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS29Q9UBQ0 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS29Q9UBQ0 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS29Q9UBQ0 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS29Q9UBQ0 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS29Q9UBQ0 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
VPS29Q9UBQ0 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS29Q9UBQ0 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.77■□□□□ 0.76
VPS29Q9UBQ0 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS29Q9UBQ0 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS29Q9UBQ0 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.77■□□□□ 0.76
VPS29Q9UBQ0 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS29Q9UBQ0 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS29Q9UBQ0 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.77■□□□□ 0.75
VPS29Q9UBQ0 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
VPS29Q9UBQ0 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
VPS29Q9UBQ0 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS29Q9UBQ0 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS29Q9UBQ0 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS29Q9UBQ0 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS29Q9UBQ0 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.76■□□□□ 0.75
VPS29Q9UBQ0 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS29Q9UBQ0 AC092667.1-201ENST00000434301 2586 ntBASIC19.76■□□□□ 0.75
VPS29Q9UBQ0 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
VPS29Q9UBQ0 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS29Q9UBQ0 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS29Q9UBQ0 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms