Protein–RNA interactions for Protein: Q9P1Z3

HCN3, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HCN3Q9P1Z3 AC007322.4-201ENST00000509611 723 ntBASIC19.66■□□□□ 0.74
HCN3Q9P1Z3 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.66■□□□□ 0.74
HCN3Q9P1Z3 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
HCN3Q9P1Z3 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.66■□□□□ 0.74
HCN3Q9P1Z3 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.66■□□□□ 0.74
HCN3Q9P1Z3 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HCN3Q9P1Z3 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
HCN3Q9P1Z3 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HCN3Q9P1Z3 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HCN3Q9P1Z3 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
HCN3Q9P1Z3 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HCN3Q9P1Z3 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
HCN3Q9P1Z3 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HCN3Q9P1Z3 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.65■□□□□ 0.74
HCN3Q9P1Z3 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HCN3Q9P1Z3 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HCN3Q9P1Z3 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.65■□□□□ 0.74
HCN3Q9P1Z3 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.65■□□□□ 0.74
HCN3Q9P1Z3 CYP2T1P-201ENST00000432607 1285 ntBASIC19.65■□□□□ 0.74
HCN3Q9P1Z3 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.65■□□□□ 0.74
HCN3Q9P1Z3 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.65■□□□□ 0.74
HCN3Q9P1Z3 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
HCN3Q9P1Z3 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HCN3Q9P1Z3 AC068338.2-201ENST00000563278 1430 ntBASIC19.65■□□□□ 0.74
HCN3Q9P1Z3 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HCN3Q9P1Z3 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
HCN3Q9P1Z3 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HCN3Q9P1Z3 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
HCN3Q9P1Z3 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
HCN3Q9P1Z3 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.64■□□□□ 0.74
HCN3Q9P1Z3 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
HCN3Q9P1Z3 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.64■□□□□ 0.73
HCN3Q9P1Z3 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
HCN3Q9P1Z3 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.64■□□□□ 0.73
HCN3Q9P1Z3 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HCN3Q9P1Z3 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HCN3Q9P1Z3 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.73
HCN3Q9P1Z3 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
HCN3Q9P1Z3 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HCN3Q9P1Z3 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.64■□□□□ 0.73
HCN3Q9P1Z3 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HCN3Q9P1Z3 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HCN3Q9P1Z3 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HCN3Q9P1Z3 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
HCN3Q9P1Z3 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HCN3Q9P1Z3 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.63■□□□□ 0.73
HCN3Q9P1Z3 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.63■□□□□ 0.73
HCN3Q9P1Z3 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
HCN3Q9P1Z3 AC091799.1-201ENST00000422823 811 ntBASIC19.63■□□□□ 0.73
HCN3Q9P1Z3 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
HCN3Q9P1Z3 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.63■□□□□ 0.73
HCN3Q9P1Z3 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.63■□□□□ 0.73
HCN3Q9P1Z3 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.63■□□□□ 0.73
HCN3Q9P1Z3 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HCN3Q9P1Z3 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
HCN3Q9P1Z3 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HCN3Q9P1Z3 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HCN3Q9P1Z3 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HCN3Q9P1Z3 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HCN3Q9P1Z3 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HCN3Q9P1Z3 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HCN3Q9P1Z3 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.62■□□□□ 0.73
HCN3Q9P1Z3 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HCN3Q9P1Z3 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HCN3Q9P1Z3 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HCN3Q9P1Z3 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
HCN3Q9P1Z3 AL591742.1-201ENST00000604433 565 ntBASIC19.62■□□□□ 0.73
HCN3Q9P1Z3 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.62■□□□□ 0.73
HCN3Q9P1Z3 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HCN3Q9P1Z3 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HCN3Q9P1Z3 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HCN3Q9P1Z3 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.61■□□□□ 0.73
HCN3Q9P1Z3 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
HCN3Q9P1Z3 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.61■□□□□ 0.73
HCN3Q9P1Z3 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
HCN3Q9P1Z3 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.61■□□□□ 0.73
HCN3Q9P1Z3 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HCN3Q9P1Z3 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HCN3Q9P1Z3 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.61■□□□□ 0.73
HCN3Q9P1Z3 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HCN3Q9P1Z3 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.61■□□□□ 0.73
HCN3Q9P1Z3 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
HCN3Q9P1Z3 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.61■□□□□ 0.73
HCN3Q9P1Z3 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HCN3Q9P1Z3 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.61■□□□□ 0.73
HCN3Q9P1Z3 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HCN3Q9P1Z3 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HCN3Q9P1Z3 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HCN3Q9P1Z3 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HCN3Q9P1Z3 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
HCN3Q9P1Z3 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.61■□□□□ 0.73
HCN3Q9P1Z3 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HCN3Q9P1Z3 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
HCN3Q9P1Z3 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
HCN3Q9P1Z3 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HCN3Q9P1Z3 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.6■□□□□ 0.73
HCN3Q9P1Z3 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HCN3Q9P1Z3 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
HCN3Q9P1Z3 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.6■□□□□ 0.73
HCN3Q9P1Z3 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms