Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC133552.2-202ENST00000575694 574 ntBASIC20.5■□□□□ 0.87
TRIM39Q9HCM9 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM39Q9HCM9 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
TRIM39Q9HCM9 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.5■□□□□ 0.87
TRIM39Q9HCM9 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM39Q9HCM9 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM39Q9HCM9 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM39Q9HCM9 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM39Q9HCM9 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM39Q9HCM9 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM39Q9HCM9 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM39Q9HCM9 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM39Q9HCM9 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
TRIM39Q9HCM9 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM39Q9HCM9 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM39Q9HCM9 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM39Q9HCM9 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM39Q9HCM9 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM39Q9HCM9 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.49■□□□□ 0.87
TRIM39Q9HCM9 CYP2T1P-201ENST00000432607 1285 ntBASIC20.49■□□□□ 0.87
TRIM39Q9HCM9 CDV3P1-201ENST00000471403 739 ntBASIC20.49■□□□□ 0.87
TRIM39Q9HCM9 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.49■□□□□ 0.87
TRIM39Q9HCM9 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM39Q9HCM9 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM39Q9HCM9 OR10C1-204ENST00000622521 1039 ntBASIC20.49■□□□□ 0.87
TRIM39Q9HCM9 AC008694.1-202ENST00000636953 945 ntBASIC20.49■□□□□ 0.87
TRIM39Q9HCM9 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
TRIM39Q9HCM9 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM39Q9HCM9 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
TRIM39Q9HCM9 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM39Q9HCM9 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.49■□□□□ 0.87
TRIM39Q9HCM9 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM39Q9HCM9 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM39Q9HCM9 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
TRIM39Q9HCM9 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM39Q9HCM9 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.48■□□□□ 0.87
TRIM39Q9HCM9 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM39Q9HCM9 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM39Q9HCM9 ID1-201ENST00000376105 1233 ntBASIC20.48■□□□□ 0.87
TRIM39Q9HCM9 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM39Q9HCM9 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
TRIM39Q9HCM9 AC083906.2-201ENST00000511578 360 ntBASIC20.48■□□□□ 0.87
TRIM39Q9HCM9 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.48■□□□□ 0.87
TRIM39Q9HCM9 AC069236.1-201ENST00000604339 616 ntBASIC20.48■□□□□ 0.87
TRIM39Q9HCM9 AL121832.2-201ENST00000610979 668 ntBASIC20.48■□□□□ 0.87
TRIM39Q9HCM9 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
TRIM39Q9HCM9 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.48■□□□□ 0.87
TRIM39Q9HCM9 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM39Q9HCM9 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
TRIM39Q9HCM9 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM39Q9HCM9 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
TRIM39Q9HCM9 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM39Q9HCM9 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.47■□□□□ 0.87
TRIM39Q9HCM9 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
TRIM39Q9HCM9 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM39Q9HCM9 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM39Q9HCM9 GPX1P1-201ENST00000388829 606 ntBASIC20.47■□□□□ 0.87
TRIM39Q9HCM9 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.47■□□□□ 0.87
TRIM39Q9HCM9 OAS3-207ENST00000551007 998 ntTSL 2 BASIC20.47■□□□□ 0.87
TRIM39Q9HCM9 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.47■□□□□ 0.87
TRIM39Q9HCM9 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.47■□□□□ 0.87
TRIM39Q9HCM9 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM39Q9HCM9 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM39Q9HCM9 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM39Q9HCM9 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM39Q9HCM9 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
TRIM39Q9HCM9 METTL15-202ENST00000403099 795 ntTSL 5 BASIC20.46■□□□□ 0.87
TRIM39Q9HCM9 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.46■□□□□ 0.87
TRIM39Q9HCM9 AF201337.1-201ENST00000520239 748 ntBASIC20.46■□□□□ 0.87
TRIM39Q9HCM9 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
TRIM39Q9HCM9 AC016405.3-201ENST00000607710 860 ntBASIC20.46■□□□□ 0.87
TRIM39Q9HCM9 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.46■□□□□ 0.87
TRIM39Q9HCM9 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.46■□□□□ 0.87
TRIM39Q9HCM9 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.46■□□□□ 0.87
TRIM39Q9HCM9 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM39Q9HCM9 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
TRIM39Q9HCM9 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM39Q9HCM9 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.46■□□□□ 0.87
TRIM39Q9HCM9 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM39Q9HCM9 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.46■□□□□ 0.87
TRIM39Q9HCM9 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
TRIM39Q9HCM9 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
TRIM39Q9HCM9 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM39Q9HCM9 SLC25A24-204ENST00000569674 2357 ntBASIC20.45■□□□□ 0.86
TRIM39Q9HCM9 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
TRIM39Q9HCM9 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM39Q9HCM9 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.45■□□□□ 0.86
TRIM39Q9HCM9 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM39Q9HCM9 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM39Q9HCM9 AC116050.2-201ENST00000612102 1779 ntBASIC20.45■□□□□ 0.86
TRIM39Q9HCM9 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
TRIM39Q9HCM9 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.45■□□□□ 0.86
TRIM39Q9HCM9 AL512625.2-201ENST00000417533 625 ntBASIC20.45■□□□□ 0.86
TRIM39Q9HCM9 AC007322.3-201ENST00000426526 701 ntBASIC20.45■□□□□ 0.86
TRIM39Q9HCM9 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.45■□□□□ 0.86
TRIM39Q9HCM9 RARRES2P4-201ENST00000514074 484 ntBASIC20.45■□□□□ 0.86
TRIM39Q9HCM9 FAM21FP-204ENST00000608637 956 ntBASIC20.45■□□□□ 0.86
TRIM39Q9HCM9 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM39Q9HCM9 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
TRIM39Q9HCM9 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms