Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PCDH9Q9HC56 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC21.35■■□□□ 1.01
PCDH9Q9HC56 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.35■■□□□ 1.01
PCDH9Q9HC56 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.35■■□□□ 1.01
PCDH9Q9HC56 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PCDH9Q9HC56 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
PCDH9Q9HC56 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
PCDH9Q9HC56 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC21.35■■□□□ 1.01
PCDH9Q9HC56 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
PCDH9Q9HC56 AC053503.5-201ENST00000601508 636 ntBASIC21.35■■□□□ 1.01
PCDH9Q9HC56 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
PCDH9Q9HC56 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PCDH9Q9HC56 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
PCDH9Q9HC56 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
PCDH9Q9HC56 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PCDH9Q9HC56 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.35■■□□□ 1.01
PCDH9Q9HC56 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PCDH9Q9HC56 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
PCDH9Q9HC56 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDH9Q9HC56 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
PCDH9Q9HC56 AC007225.1-201ENST00000566331 1836 ntBASIC21.34■■□□□ 1.01
PCDH9Q9HC56 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDH9Q9HC56 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDH9Q9HC56 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.34■■□□□ 1.01
PCDH9Q9HC56 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
PCDH9Q9HC56 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.34■■□□□ 1.01
PCDH9Q9HC56 MIR5787-201ENST00000611784 55 ntBASIC21.34■■□□□ 1.01
PCDH9Q9HC56 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.34■■□□□ 1.01
PCDH9Q9HC56 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
PCDH9Q9HC56 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
PCDH9Q9HC56 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDH9Q9HC56 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
PCDH9Q9HC56 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDH9Q9HC56 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDH9Q9HC56 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
PCDH9Q9HC56 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDH9Q9HC56 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
PCDH9Q9HC56 AP004607.4-201ENST00000530158 1459 ntBASIC21.33■■□□□ 1.01
PCDH9Q9HC56 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.33■■□□□ 1.01
PCDH9Q9HC56 AC004854.2-201ENST00000608450 1441 ntBASIC21.33■■□□□ 1.01
PCDH9Q9HC56 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.33■■□□□ 1.01
PCDH9Q9HC56 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
PCDH9Q9HC56 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.33■■□□□ 1.01
PCDH9Q9HC56 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.33■■□□□ 1.01
PCDH9Q9HC56 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
PCDH9Q9HC56 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.33■■□□□ 1
PCDH9Q9HC56 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
PCDH9Q9HC56 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.33■■□□□ 1
PCDH9Q9HC56 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.33■■□□□ 1
PCDH9Q9HC56 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC21.33■■□□□ 1
PCDH9Q9HC56 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC21.33■■□□□ 1
PCDH9Q9HC56 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1
PCDH9Q9HC56 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.33■■□□□ 1
PCDH9Q9HC56 AC027702.1-201ENST00000563810 1770 ntBASIC21.33■■□□□ 1
PCDH9Q9HC56 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
PCDH9Q9HC56 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
PCDH9Q9HC56 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PCDH9Q9HC56 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PCDH9Q9HC56 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC21.32■■□□□ 1
PCDH9Q9HC56 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.32■■□□□ 1
PCDH9Q9HC56 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.32■■□□□ 1
PCDH9Q9HC56 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.32■■□□□ 1
PCDH9Q9HC56 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.32■■□□□ 1
PCDH9Q9HC56 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.32■■□□□ 1
PCDH9Q9HC56 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
PCDH9Q9HC56 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC21.32■■□□□ 1
PCDH9Q9HC56 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PCDH9Q9HC56 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
PCDH9Q9HC56 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
PCDH9Q9HC56 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.31■■□□□ 1
PCDH9Q9HC56 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC21.31■■□□□ 1
PCDH9Q9HC56 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
PCDH9Q9HC56 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.31■■□□□ 1
PCDH9Q9HC56 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
PCDH9Q9HC56 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC21.31■■□□□ 1
PCDH9Q9HC56 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.31■■□□□ 1
PCDH9Q9HC56 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.31■■□□□ 1
PCDH9Q9HC56 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.31■■□□□ 1
PCDH9Q9HC56 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.31■■□□□ 1
PCDH9Q9HC56 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.31■■□□□ 1
PCDH9Q9HC56 NTF6G-201ENST00000591094 616 ntBASIC21.31■■□□□ 1
PCDH9Q9HC56 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
PCDH9Q9HC56 AC104187.1-201ENST00000607510 612 ntBASIC21.31■■□□□ 1
PCDH9Q9HC56 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.31■■□□□ 1
PCDH9Q9HC56 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PCDH9Q9HC56 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PCDH9Q9HC56 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
PCDH9Q9HC56 EXOC3-AS1-202ENST00000623673 1663 ntBASIC21.31■■□□□ 1
PCDH9Q9HC56 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
PCDH9Q9HC56 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.3■■□□□ 1
PCDH9Q9HC56 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.3■■□□□ 1
PCDH9Q9HC56 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
PCDH9Q9HC56 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PCDH9Q9HC56 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.3■■□□□ 1
PCDH9Q9HC56 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.3■■□□□ 1
PCDH9Q9HC56 GALNS-213ENST00000569433 723 ntTSL 3 BASIC21.3■■□□□ 1
PCDH9Q9HC56 KRT18P61-201ENST00000585825 1298 ntBASIC21.3■■□□□ 1
PCDH9Q9HC56 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC21.3■■□□□ 1
PCDH9Q9HC56 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.3■■□□□ 1
PCDH9Q9HC56 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms