Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CFAP54Q96N23 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CFAP54Q96N23 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CFAP54Q96N23 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CFAP54Q96N23 KRT16P2-201ENST00000414673 1423 ntBASIC20.46■□□□□ 0.87
CFAP54Q96N23 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CFAP54Q96N23 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CFAP54Q96N23 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CFAP54Q96N23 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.46■□□□□ 0.87
CFAP54Q96N23 CYP2D8P-201ENST00000433633 1490 ntBASIC20.46■□□□□ 0.87
CFAP54Q96N23 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
CFAP54Q96N23 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CFAP54Q96N23 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
CFAP54Q96N23 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.46■□□□□ 0.87
CFAP54Q96N23 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CFAP54Q96N23 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.45■□□□□ 0.86
CFAP54Q96N23 BX664615.1-201ENST00000443558 458 ntBASIC20.45■□□□□ 0.86
CFAP54Q96N23 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CFAP54Q96N23 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.45■□□□□ 0.86
CFAP54Q96N23 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.45■□□□□ 0.86
CFAP54Q96N23 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CFAP54Q96N23 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CFAP54Q96N23 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CFAP54Q96N23 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
CFAP54Q96N23 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CFAP54Q96N23 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CFAP54Q96N23 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.45■□□□□ 0.86
CFAP54Q96N23 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.45■□□□□ 0.86
CFAP54Q96N23 AP004607.7-201ENST00000527152 1677 ntBASIC20.45■□□□□ 0.86
CFAP54Q96N23 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CFAP54Q96N23 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CFAP54Q96N23 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.45■□□□□ 0.86
CFAP54Q96N23 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CFAP54Q96N23 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CFAP54Q96N23 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.45■□□□□ 0.86
CFAP54Q96N23 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC20.45■□□□□ 0.86
CFAP54Q96N23 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.45■□□□□ 0.86
CFAP54Q96N23 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CFAP54Q96N23 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
CFAP54Q96N23 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CFAP54Q96N23 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CFAP54Q96N23 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CFAP54Q96N23 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.44■□□□□ 0.86
CFAP54Q96N23 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.44■□□□□ 0.86
CFAP54Q96N23 AC004263.2-201ENST00000617183 678 ntBASIC20.44■□□□□ 0.86
CFAP54Q96N23 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.44■□□□□ 0.86
CFAP54Q96N23 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CFAP54Q96N23 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.44■□□□□ 0.86
CFAP54Q96N23 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.44■□□□□ 0.86
CFAP54Q96N23 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CFAP54Q96N23 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC20.44■□□□□ 0.86
CFAP54Q96N23 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.44■□□□□ 0.86
CFAP54Q96N23 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
CFAP54Q96N23 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.44■□□□□ 0.86
CFAP54Q96N23 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.44■□□□□ 0.86
CFAP54Q96N23 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.43■□□□□ 0.86
CFAP54Q96N23 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
CFAP54Q96N23 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC20.43■□□□□ 0.86
CFAP54Q96N23 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CFAP54Q96N23 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC20.43■□□□□ 0.86
CFAP54Q96N23 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
CFAP54Q96N23 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.43■□□□□ 0.86
CFAP54Q96N23 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.43■□□□□ 0.86
CFAP54Q96N23 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.43■□□□□ 0.86
CFAP54Q96N23 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CFAP54Q96N23 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CFAP54Q96N23 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CFAP54Q96N23 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CFAP54Q96N23 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.42■□□□□ 0.86
CFAP54Q96N23 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.42■□□□□ 0.86
CFAP54Q96N23 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
CFAP54Q96N23 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.42■□□□□ 0.86
CFAP54Q96N23 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
CFAP54Q96N23 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CFAP54Q96N23 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
CFAP54Q96N23 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CFAP54Q96N23 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.42■□□□□ 0.86
CFAP54Q96N23 COPS8-203ENST00000409334 794 ntTSL 5 BASIC20.42■□□□□ 0.86
CFAP54Q96N23 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.42■□□□□ 0.86
CFAP54Q96N23 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
CFAP54Q96N23 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CFAP54Q96N23 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.42■□□□□ 0.86
CFAP54Q96N23 AP000347.1-202ENST00000435868 847 ntBASIC20.42■□□□□ 0.86
CFAP54Q96N23 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.42■□□□□ 0.86
CFAP54Q96N23 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CFAP54Q96N23 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
CFAP54Q96N23 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.41■□□□□ 0.86
CFAP54Q96N23 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.41■□□□□ 0.86
CFAP54Q96N23 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.41■□□□□ 0.86
CFAP54Q96N23 REXO1L10P-201ENST00000615707 1290 ntBASIC20.41■□□□□ 0.86
CFAP54Q96N23 AC006011.2-201ENST00000621313 1158 ntBASIC20.41■□□□□ 0.86
CFAP54Q96N23 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC20.41■□□□□ 0.86
CFAP54Q96N23 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CFAP54Q96N23 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CFAP54Q96N23 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.41■□□□□ 0.86
CFAP54Q96N23 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.41■□□□□ 0.86
CFAP54Q96N23 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CFAP54Q96N23 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.41■□□□□ 0.86
CFAP54Q96N23 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.41■□□□□ 0.86
CFAP54Q96N23 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms