Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC24.59■■□□□ 1.53
NKX2-3Q8TAU0 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC24.58■■□□□ 1.53
NKX2-3Q8TAU0 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC24.58■■□□□ 1.53
NKX2-3Q8TAU0 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
NKX2-3Q8TAU0 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
NKX2-3Q8TAU0 DUSP5P2-201ENST00000426873 1033 ntBASIC24.58■■□□□ 1.53
NKX2-3Q8TAU0 APTR-203ENST00000430801 583 ntTSL 5 BASIC24.58■■□□□ 1.53
NKX2-3Q8TAU0 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC24.58■■□□□ 1.53
NKX2-3Q8TAU0 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC24.58■■□□□ 1.53
NKX2-3Q8TAU0 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
NKX2-3Q8TAU0 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
NKX2-3Q8TAU0 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC24.58■■□□□ 1.53
NKX2-3Q8TAU0 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
NKX2-3Q8TAU0 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
NKX2-3Q8TAU0 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
NKX2-3Q8TAU0 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
NKX2-3Q8TAU0 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC24.57■■□□□ 1.52
NKX2-3Q8TAU0 AC016405.3-201ENST00000607710 860 ntBASIC24.57■■□□□ 1.52
NKX2-3Q8TAU0 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
NKX2-3Q8TAU0 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC24.57■■□□□ 1.52
NKX2-3Q8TAU0 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC24.56■■□□□ 1.52
NKX2-3Q8TAU0 BAALC-201ENST00000297574 801 ntTSL 3 BASIC24.56■■□□□ 1.52
NKX2-3Q8TAU0 BMP1-204ENST00000397814 836 ntTSL 4 BASIC24.56■■□□□ 1.52
NKX2-3Q8TAU0 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
NKX2-3Q8TAU0 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC24.56■■□□□ 1.52
NKX2-3Q8TAU0 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
NKX2-3Q8TAU0 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC24.56■■□□□ 1.52
NKX2-3Q8TAU0 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC24.56■■□□□ 1.52
NKX2-3Q8TAU0 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
NKX2-3Q8TAU0 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC24.55■■□□□ 1.52
NKX2-3Q8TAU0 GCSHP5-201ENST00000443090 522 ntBASIC24.55■■□□□ 1.52
NKX2-3Q8TAU0 AC098590.1-201ENST00000468126 897 ntBASIC24.55■■□□□ 1.52
NKX2-3Q8TAU0 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC24.55■■□□□ 1.52
NKX2-3Q8TAU0 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC24.55■■□□□ 1.52
NKX2-3Q8TAU0 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC24.55■■□□□ 1.52
NKX2-3Q8TAU0 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC24.54■■□□□ 1.52
NKX2-3Q8TAU0 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
NKX2-3Q8TAU0 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
NKX2-3Q8TAU0 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC24.54■■□□□ 1.52
NKX2-3Q8TAU0 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC24.54■■□□□ 1.52
NKX2-3Q8TAU0 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
NKX2-3Q8TAU0 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
NKX2-3Q8TAU0 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
NKX2-3Q8TAU0 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC24.54■■□□□ 1.52
NKX2-3Q8TAU0 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC24.54■■□□□ 1.52
NKX2-3Q8TAU0 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC24.54■■□□□ 1.52
NKX2-3Q8TAU0 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
NKX2-3Q8TAU0 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
NKX2-3Q8TAU0 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
NKX2-3Q8TAU0 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC24.54■■□□□ 1.52
NKX2-3Q8TAU0 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC24.53■■□□□ 1.52
NKX2-3Q8TAU0 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC24.53■■□□□ 1.52
NKX2-3Q8TAU0 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC24.53■■□□□ 1.52
NKX2-3Q8TAU0 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
NKX2-3Q8TAU0 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
NKX2-3Q8TAU0 AL049796.1-201ENST00000565336 1766 ntBASIC24.53■■□□□ 1.52
NKX2-3Q8TAU0 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC24.53■■□□□ 1.52
NKX2-3Q8TAU0 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC24.53■■□□□ 1.52
NKX2-3Q8TAU0 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC24.53■■□□□ 1.52
NKX2-3Q8TAU0 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
NKX2-3Q8TAU0 RPS2P4-201ENST00000476944 856 ntBASIC24.53■■□□□ 1.52
NKX2-3Q8TAU0 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC24.53■■□□□ 1.52
NKX2-3Q8TAU0 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
NKX2-3Q8TAU0 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC24.53■■□□□ 1.52
NKX2-3Q8TAU0 AC243732.1-201ENST00000612648 864 ntBASIC24.53■■□□□ 1.52
NKX2-3Q8TAU0 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC24.53■■□□□ 1.52
NKX2-3Q8TAU0 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
NKX2-3Q8TAU0 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
NKX2-3Q8TAU0 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC24.53■■□□□ 1.52
NKX2-3Q8TAU0 EXOC3-AS1-202ENST00000623673 1663 ntBASIC24.53■■□□□ 1.52
NKX2-3Q8TAU0 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
NKX2-3Q8TAU0 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
NKX2-3Q8TAU0 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
NKX2-3Q8TAU0 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC24.52■■□□□ 1.52
NKX2-3Q8TAU0 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC24.52■■□□□ 1.52
NKX2-3Q8TAU0 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC24.52■■□□□ 1.52
NKX2-3Q8TAU0 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
NKX2-3Q8TAU0 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
NKX2-3Q8TAU0 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC24.52■■□□□ 1.52
NKX2-3Q8TAU0 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC24.52■■□□□ 1.52
NKX2-3Q8TAU0 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC24.52■■□□□ 1.52
NKX2-3Q8TAU0 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC24.52■■□□□ 1.52
NKX2-3Q8TAU0 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
NKX2-3Q8TAU0 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC24.51■■□□□ 1.51
NKX2-3Q8TAU0 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC24.51■■□□□ 1.51
NKX2-3Q8TAU0 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
NKX2-3Q8TAU0 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC24.51■■□□□ 1.51
NKX2-3Q8TAU0 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
NKX2-3Q8TAU0 AL596275.1-201ENST00000423464 877 ntBASIC24.51■■□□□ 1.51
NKX2-3Q8TAU0 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
NKX2-3Q8TAU0 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC24.51■■□□□ 1.51
NKX2-3Q8TAU0 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC24.51■■□□□ 1.51
NKX2-3Q8TAU0 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
NKX2-3Q8TAU0 AC120498.10-201ENST00000621827 505 ntBASIC24.51■■□□□ 1.51
NKX2-3Q8TAU0 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC24.51■■□□□ 1.51
NKX2-3Q8TAU0 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
NKX2-3Q8TAU0 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.51
NKX2-3Q8TAU0 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC24.51■■□□□ 1.51
NKX2-3Q8TAU0 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
NKX2-3Q8TAU0 PARN-205ENST00000539279 1557 ntTSL 2 BASIC24.5■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms