Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.04■□□□□ 0.8
RNF111Q6ZNA4 AP004607.7-201ENST00000527152 1677 ntBASIC20.03■□□□□ 0.8
RNF111Q6ZNA4 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.03■□□□□ 0.8
RNF111Q6ZNA4 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RNF111Q6ZNA4 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
RNF111Q6ZNA4 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RNF111Q6ZNA4 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RNF111Q6ZNA4 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RNF111Q6ZNA4 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RNF111Q6ZNA4 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RNF111Q6ZNA4 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RNF111Q6ZNA4 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
RNF111Q6ZNA4 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RNF111Q6ZNA4 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.03■□□□□ 0.8
RNF111Q6ZNA4 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
RNF111Q6ZNA4 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RNF111Q6ZNA4 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
RNF111Q6ZNA4 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
RNF111Q6ZNA4 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RNF111Q6ZNA4 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.03■□□□□ 0.8
RNF111Q6ZNA4 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
RNF111Q6ZNA4 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
RNF111Q6ZNA4 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
RNF111Q6ZNA4 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
RNF111Q6ZNA4 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
RNF111Q6ZNA4 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
RNF111Q6ZNA4 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
RNF111Q6ZNA4 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RNF111Q6ZNA4 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
RNF111Q6ZNA4 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.02■□□□□ 0.8
RNF111Q6ZNA4 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RNF111Q6ZNA4 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RNF111Q6ZNA4 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
RNF111Q6ZNA4 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RNF111Q6ZNA4 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RNF111Q6ZNA4 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
RNF111Q6ZNA4 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RNF111Q6ZNA4 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.02■□□□□ 0.8
RNF111Q6ZNA4 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.02■□□□□ 0.8
RNF111Q6ZNA4 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RNF111Q6ZNA4 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.02■□□□□ 0.8
RNF111Q6ZNA4 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.02■□□□□ 0.8
RNF111Q6ZNA4 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
RNF111Q6ZNA4 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
RNF111Q6ZNA4 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
RNF111Q6ZNA4 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
RNF111Q6ZNA4 AC112907.3-201ENST00000577781 2400 ntBASIC20.02■□□□□ 0.79
RNF111Q6ZNA4 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
RNF111Q6ZNA4 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
RNF111Q6ZNA4 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.01■□□□□ 0.79
RNF111Q6ZNA4 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.01■□□□□ 0.79
RNF111Q6ZNA4 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RNF111Q6ZNA4 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RNF111Q6ZNA4 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RNF111Q6ZNA4 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.01■□□□□ 0.79
RNF111Q6ZNA4 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.01■□□□□ 0.79
RNF111Q6ZNA4 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
RNF111Q6ZNA4 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
RNF111Q6ZNA4 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.01■□□□□ 0.79
RNF111Q6ZNA4 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RNF111Q6ZNA4 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RNF111Q6ZNA4 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20■□□□□ 0.79
RNF111Q6ZNA4 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
RNF111Q6ZNA4 YBX1P1-201ENST00000445822 960 ntBASIC20■□□□□ 0.79
RNF111Q6ZNA4 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
RNF111Q6ZNA4 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20■□□□□ 0.79
RNF111Q6ZNA4 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20■□□□□ 0.79
RNF111Q6ZNA4 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RNF111Q6ZNA4 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RNF111Q6ZNA4 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RNF111Q6ZNA4 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RNF111Q6ZNA4 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20■□□□□ 0.79
RNF111Q6ZNA4 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20■□□□□ 0.79
RNF111Q6ZNA4 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20■□□□□ 0.79
RNF111Q6ZNA4 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
RNF111Q6ZNA4 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF111Q6ZNA4 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF111Q6ZNA4 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF111Q6ZNA4 PLK5-205ENST00000642079 1969 ntBASIC19.99■□□□□ 0.79
RNF111Q6ZNA4 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF111Q6ZNA4 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF111Q6ZNA4 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF111Q6ZNA4 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF111Q6ZNA4 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.99■□□□□ 0.79
RNF111Q6ZNA4 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF111Q6ZNA4 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF111Q6ZNA4 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF111Q6ZNA4 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.99■□□□□ 0.79
RNF111Q6ZNA4 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.99■□□□□ 0.79
RNF111Q6ZNA4 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
RNF111Q6ZNA4 AC006128.1-201ENST00000624704 1661 ntBASIC19.99■□□□□ 0.79
RNF111Q6ZNA4 AC009237.3-201ENST00000393279 1427 ntBASIC19.99■□□□□ 0.79
RNF111Q6ZNA4 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF111Q6ZNA4 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.99■□□□□ 0.79
RNF111Q6ZNA4 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.99■□□□□ 0.79
RNF111Q6ZNA4 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF111Q6ZNA4 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
RNF111Q6ZNA4 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF111Q6ZNA4 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
RNF111Q6ZNA4 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms