Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
H3F3AP84243 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
H3F3AP84243 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
H3F3AP84243 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
H3F3AP84243 PTPA-214ENST00000423100 988 ntTSL 2 BASIC18.5■□□□□ 0.55
H3F3AP84243 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18.5■□□□□ 0.55
H3F3AP84243 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
H3F3AP84243 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
H3F3AP84243 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC18.5■□□□□ 0.55
H3F3AP84243 AC231657.2-201ENST00000624556 255 ntBASIC18.5■□□□□ 0.55
H3F3AP84243 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.5■□□□□ 0.55
H3F3AP84243 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
H3F3AP84243 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.5■□□□□ 0.55
H3F3AP84243 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
H3F3AP84243 AC116050.2-201ENST00000612102 1779 ntBASIC18.5■□□□□ 0.55
H3F3AP84243 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
H3F3AP84243 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.49■□□□□ 0.55
H3F3AP84243 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
H3F3AP84243 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.49■□□□□ 0.55
H3F3AP84243 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
H3F3AP84243 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
H3F3AP84243 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
H3F3AP84243 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.49■□□□□ 0.55
H3F3AP84243 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
H3F3AP84243 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC18.49■□□□□ 0.55
H3F3AP84243 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.49■□□□□ 0.55
H3F3AP84243 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC18.49■□□□□ 0.55
H3F3AP84243 AL591742.1-201ENST00000604433 565 ntBASIC18.49■□□□□ 0.55
H3F3AP84243 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
H3F3AP84243 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.49■□□□□ 0.55
H3F3AP84243 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.49■□□□□ 0.55
H3F3AP84243 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
H3F3AP84243 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
H3F3AP84243 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
H3F3AP84243 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
H3F3AP84243 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
H3F3AP84243 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
H3F3AP84243 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC18.48■□□□□ 0.55
H3F3AP84243 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
H3F3AP84243 SAPCD2P1-201ENST00000395413 1184 ntBASIC18.48■□□□□ 0.55
H3F3AP84243 CDCA4P2-201ENST00000441182 718 ntBASIC18.48■□□□□ 0.55
H3F3AP84243 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.48■□□□□ 0.55
H3F3AP84243 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.48■□□□□ 0.55
H3F3AP84243 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
H3F3AP84243 RAP2CP1-201ENST00000605103 478 ntBASIC18.48■□□□□ 0.55
H3F3AP84243 AC073111.5-205ENST00000641717 521 ntBASIC18.48■□□□□ 0.55
H3F3AP84243 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
H3F3AP84243 AC121338.2-201ENST00000622535 1744 ntBASIC18.48■□□□□ 0.55
H3F3AP84243 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
H3F3AP84243 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.48■□□□□ 0.55
H3F3AP84243 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
H3F3AP84243 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
H3F3AP84243 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
H3F3AP84243 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
H3F3AP84243 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
H3F3AP84243 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
H3F3AP84243 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.47■□□□□ 0.55
H3F3AP84243 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
H3F3AP84243 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
H3F3AP84243 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
H3F3AP84243 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.47■□□□□ 0.55
H3F3AP84243 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
H3F3AP84243 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.47■□□□□ 0.55
H3F3AP84243 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
H3F3AP84243 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.47■□□□□ 0.55
H3F3AP84243 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.47■□□□□ 0.55
H3F3AP84243 PLK5-205ENST00000642079 1969 ntBASIC18.47■□□□□ 0.55
H3F3AP84243 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
H3F3AP84243 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
H3F3AP84243 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
H3F3AP84243 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC18.47■□□□□ 0.55
H3F3AP84243 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
H3F3AP84243 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
H3F3AP84243 AC068338.2-201ENST00000563278 1430 ntBASIC18.47■□□□□ 0.55
H3F3AP84243 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
H3F3AP84243 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.47■□□□□ 0.55
H3F3AP84243 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
H3F3AP84243 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
H3F3AP84243 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
H3F3AP84243 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
H3F3AP84243 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
H3F3AP84243 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.46■□□□□ 0.55
H3F3AP84243 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC18.46■□□□□ 0.55
H3F3AP84243 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.46■□□□□ 0.55
H3F3AP84243 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
H3F3AP84243 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
H3F3AP84243 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
H3F3AP84243 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.46■□□□□ 0.55
H3F3AP84243 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
H3F3AP84243 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
H3F3AP84243 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
H3F3AP84243 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC18.46■□□□□ 0.55
H3F3AP84243 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.46■□□□□ 0.55
H3F3AP84243 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.46■□□□□ 0.55
H3F3AP84243 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC18.46■□□□□ 0.55
H3F3AP84243 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.46■□□□□ 0.55
H3F3AP84243 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
H3F3AP84243 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
H3F3AP84243 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
H3F3AP84243 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms