Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.64■□□□□ 0.73
LIM2P55344 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
LIM2P55344 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.64■□□□□ 0.73
LIM2P55344 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIM2P55344 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIM2P55344 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIM2P55344 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIM2P55344 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIM2P55344 AL157384.1-201ENST00000445995 2473 ntBASIC19.63■□□□□ 0.73
LIM2P55344 SLC25A24-204ENST00000569674 2357 ntBASIC19.63■□□□□ 0.73
LIM2P55344 AC073130.3-201ENST00000624389 2278 ntBASIC19.63■□□□□ 0.73
LIM2P55344 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIM2P55344 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.63■□□□□ 0.73
LIM2P55344 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.63■□□□□ 0.73
LIM2P55344 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIM2P55344 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIM2P55344 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIM2P55344 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.63■□□□□ 0.73
LIM2P55344 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIM2P55344 TERF1P5-201ENST00000477545 1207 ntBASIC19.63■□□□□ 0.73
LIM2P55344 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.63■□□□□ 0.73
LIM2P55344 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIM2P55344 AC092666.2-201ENST00000613287 246 ntBASIC19.63■□□□□ 0.73
LIM2P55344 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.63■□□□□ 0.73
LIM2P55344 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.63■□□□□ 0.73
LIM2P55344 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIM2P55344 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
LIM2P55344 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIM2P55344 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.62■□□□□ 0.73
LIM2P55344 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.62■□□□□ 0.73
LIM2P55344 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LIM2P55344 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIM2P55344 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
LIM2P55344 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LIM2P55344 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
LIM2P55344 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.62■□□□□ 0.73
LIM2P55344 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIM2P55344 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIM2P55344 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIM2P55344 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.62■□□□□ 0.73
LIM2P55344 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.62■□□□□ 0.73
LIM2P55344 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.62■□□□□ 0.73
LIM2P55344 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.62■□□□□ 0.73
LIM2P55344 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
LIM2P55344 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIM2P55344 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
LIM2P55344 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIM2P55344 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
LIM2P55344 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.62■□□□□ 0.73
LIM2P55344 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
LIM2P55344 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIM2P55344 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIM2P55344 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIM2P55344 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIM2P55344 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIM2P55344 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIM2P55344 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.61■□□□□ 0.73
LIM2P55344 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIM2P55344 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.61■□□□□ 0.73
LIM2P55344 DUX4L16-201ENST00000555130 1264 ntBASIC19.61■□□□□ 0.73
LIM2P55344 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
LIM2P55344 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.61■□□□□ 0.73
LIM2P55344 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.61■□□□□ 0.73
LIM2P55344 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIM2P55344 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIM2P55344 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIM2P55344 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
LIM2P55344 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.6■□□□□ 0.73
LIM2P55344 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIM2P55344 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIM2P55344 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.6■□□□□ 0.73
LIM2P55344 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.6■□□□□ 0.73
LIM2P55344 AC091799.1-201ENST00000422823 811 ntBASIC19.6■□□□□ 0.73
LIM2P55344 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.6■□□□□ 0.73
LIM2P55344 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LIM2P55344 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.6■□□□□ 0.73
LIM2P55344 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIM2P55344 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LIM2P55344 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LIM2P55344 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.6■□□□□ 0.73
LIM2P55344 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIM2P55344 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.59■□□□□ 0.73
LIM2P55344 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIM2P55344 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
LIM2P55344 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.59■□□□□ 0.73
LIM2P55344 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.59■□□□□ 0.73
LIM2P55344 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
LIM2P55344 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIM2P55344 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
LIM2P55344 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.59■□□□□ 0.73
LIM2P55344 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIM2P55344 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIM2P55344 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIM2P55344 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIM2P55344 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
LIM2P55344 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIM2P55344 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIM2P55344 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIM2P55344 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIM2P55344 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms