Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA3P55318 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA3P55318 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA3P55318 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA3P55318 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA3P55318 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
FOXA3P55318 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA3P55318 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC15.49■□□□□ 0.07
FOXA3P55318 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA3P55318 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA3P55318 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
FOXA3P55318 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
FOXA3P55318 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA3P55318 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
FOXA3P55318 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA3P55318 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC15.49■□□□□ 0.07
FOXA3P55318 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC15.49■□□□□ 0.07
FOXA3P55318 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC15.49■□□□□ 0.07
FOXA3P55318 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC15.49■□□□□ 0.07
FOXA3P55318 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA3P55318 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA3P55318 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC15.49■□□□□ 0.07
FOXA3P55318 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA3P55318 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA3P55318 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA3P55318 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC15.49■□□□□ 0.07
FOXA3P55318 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA3P55318 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
FOXA3P55318 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA3P55318 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA3P55318 AC021242.3-201ENST00000607598 1377 ntBASIC15.49■□□□□ 0.07
FOXA3P55318 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA3P55318 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
FOXA3P55318 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA3P55318 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA3P55318 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC15.48■□□□□ 0.07
FOXA3P55318 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
FOXA3P55318 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
FOXA3P55318 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA3P55318 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA3P55318 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA3P55318 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA3P55318 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
FOXA3P55318 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA3P55318 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA3P55318 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA3P55318 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
FOXA3P55318 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC15.48■□□□□ 0.07
FOXA3P55318 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA3P55318 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC15.48■□□□□ 0.07
FOXA3P55318 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA3P55318 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA3P55318 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA3P55318 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA3P55318 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC15.47■□□□□ 0.07
FOXA3P55318 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC15.47■□□□□ 0.07
FOXA3P55318 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC15.47■□□□□ 0.07
FOXA3P55318 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA3P55318 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC15.47■□□□□ 0.07
FOXA3P55318 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA3P55318 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
FOXA3P55318 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
FOXA3P55318 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC15.47■□□□□ 0.07
FOXA3P55318 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC15.47■□□□□ 0.07
FOXA3P55318 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC15.47■□□□□ 0.07
FOXA3P55318 Z92544.1-202ENST00000571933 1220 ntBASIC15.47■□□□□ 0.07
FOXA3P55318 NTF6A-201ENST00000591175 560 ntBASIC15.47■□□□□ 0.07
FOXA3P55318 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
FOXA3P55318 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
FOXA3P55318 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA3P55318 GTSE1-AS1-202ENST00000623117 1518 ntBASIC15.47■□□□□ 0.07
FOXA3P55318 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA3P55318 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA3P55318 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA3P55318 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA3P55318 AC018445.3-201ENST00000624177 1945 ntBASIC15.47■□□□□ 0.07
FOXA3P55318 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
FOXA3P55318 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA3P55318 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA3P55318 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC15.46■□□□□ 0.07
FOXA3P55318 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA3P55318 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA3P55318 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC15.46■□□□□ 0.07
FOXA3P55318 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC15.46■□□□□ 0.07
FOXA3P55318 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC15.46■□□□□ 0.07
FOXA3P55318 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA3P55318 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA3P55318 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA3P55318 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA3P55318 AC103834.1-201ENST00000520383 144 ntBASIC15.46■□□□□ 0.07
FOXA3P55318 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA3P55318 TK2-216ENST00000564917 1156 ntTSL 3 BASIC15.46■□□□□ 0.07
FOXA3P55318 HSD17B1P1-201ENST00000590052 955 ntBASIC15.46■□□□□ 0.07
FOXA3P55318 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA3P55318 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC15.46■□□□□ 0.07
FOXA3P55318 AC133637.1-201ENST00000624115 1537 ntBASIC15.46■□□□□ 0.07
FOXA3P55318 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA3P55318 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
FOXA3P55318 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
FOXA3P55318 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC15.46■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms