Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC28.93■■■□□ 2.22
MSH6P52701 P4HB-223ENST00000576390 439 ntTSL 4 BASIC28.93■■■□□ 2.22
MSH6P52701 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC28.93■■■□□ 2.22
MSH6P52701 AC145285.6-201ENST00000604632 637 ntBASIC28.93■■■□□ 2.22
MSH6P52701 AC003102.1-202ENST00000563394 1796 ntBASIC28.93■■■□□ 2.22
MSH6P52701 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
MSH6P52701 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
MSH6P52701 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC28.92■■■□□ 2.22
MSH6P52701 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC28.92■■■□□ 2.22
MSH6P52701 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC28.92■■■□□ 2.22
MSH6P52701 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC28.92■■■□□ 2.22
MSH6P52701 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC28.92■■■□□ 2.22
MSH6P52701 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC28.92■■■□□ 2.22
MSH6P52701 GRAP-204ENST00000573099 846 ntTSL 3 BASIC28.92■■■□□ 2.22
MSH6P52701 BRWD1-AS2-201ENST00000603064 1028 ntBASIC28.92■■■□□ 2.22
MSH6P52701 MIR6786-201ENST00000616843 113 ntBASIC28.92■■■□□ 2.22
MSH6P52701 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC28.92■■■□□ 2.22
MSH6P52701 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
MSH6P52701 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC28.92■■■□□ 2.22
MSH6P52701 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC28.92■■■□□ 2.22
MSH6P52701 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC28.92■■■□□ 2.22
MSH6P52701 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC28.92■■■□□ 2.22
MSH6P52701 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC28.92■■■□□ 2.22
MSH6P52701 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
MSH6P52701 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
MSH6P52701 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC28.92■■■□□ 2.22
MSH6P52701 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
MSH6P52701 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC28.91■■■□□ 2.22
MSH6P52701 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
MSH6P52701 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC28.91■■■□□ 2.22
MSH6P52701 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
MSH6P52701 NME3-204ENST00000563498 920 ntTSL 2 BASIC28.91■■■□□ 2.22
MSH6P52701 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC28.91■■■□□ 2.22
MSH6P52701 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
MSH6P52701 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
MSH6P52701 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
MSH6P52701 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
MSH6P52701 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
MSH6P52701 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC28.9■■■□□ 2.22
MSH6P52701 WDR88-203ENST00000592765 651 ntTSL 5 BASIC28.9■■■□□ 2.22
MSH6P52701 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
MSH6P52701 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC28.9■■■□□ 2.22
MSH6P52701 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC28.9■■■□□ 2.22
MSH6P52701 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC28.9■■■□□ 2.22
MSH6P52701 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC28.9■■■□□ 2.22
MSH6P52701 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC28.9■■■□□ 2.22
MSH6P52701 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC28.9■■■□□ 2.22
MSH6P52701 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC28.9■■■□□ 2.22
MSH6P52701 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC28.9■■■□□ 2.22
MSH6P52701 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
MSH6P52701 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
MSH6P52701 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC28.9■■■□□ 2.22
MSH6P52701 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
MSH6P52701 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC28.89■■■□□ 2.22
MSH6P52701 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC28.89■■■□□ 2.22
MSH6P52701 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC28.89■■■□□ 2.22
MSH6P52701 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
MSH6P52701 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC28.89■■■□□ 2.21
MSH6P52701 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC28.88■■■□□ 2.21
MSH6P52701 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC28.88■■■□□ 2.21
MSH6P52701 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC28.88■■■□□ 2.21
MSH6P52701 AC005363.2-201ENST00000618631 242 ntBASIC28.88■■■□□ 2.21
MSH6P52701 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
MSH6P52701 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
MSH6P52701 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
MSH6P52701 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC28.88■■■□□ 2.21
MSH6P52701 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC28.88■■■□□ 2.21
MSH6P52701 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC28.88■■■□□ 2.21
MSH6P52701 CRAT-202ENST00000393384 973 ntTSL 2 BASIC28.88■■■□□ 2.21
MSH6P52701 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC28.88■■■□□ 2.21
MSH6P52701 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC28.88■■■□□ 2.21
MSH6P52701 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC28.88■■■□□ 2.21
MSH6P52701 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC28.88■■■□□ 2.21
MSH6P52701 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC28.87■■■□□ 2.21
MSH6P52701 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC28.87■■■□□ 2.21
MSH6P52701 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC28.87■■■□□ 2.21
MSH6P52701 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
MSH6P52701 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
MSH6P52701 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
MSH6P52701 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
MSH6P52701 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
MSH6P52701 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC28.87■■■□□ 2.21
MSH6P52701 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC28.87■■■□□ 2.21
MSH6P52701 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC28.87■■■□□ 2.21
MSH6P52701 AC005829.2-201ENST00000571422 1056 ntBASIC28.87■■■□□ 2.21
MSH6P52701 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
MSH6P52701 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
MSH6P52701 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
MSH6P52701 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
MSH6P52701 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC28.86■■■□□ 2.21
MSH6P52701 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
MSH6P52701 AC005521.1-201ENST00000393351 872 ntBASIC28.86■■■□□ 2.21
MSH6P52701 AL355355.2-201ENST00000442321 338 ntBASIC28.86■■■□□ 2.21
MSH6P52701 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
MSH6P52701 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
MSH6P52701 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
MSH6P52701 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC28.85■■■□□ 2.21
MSH6P52701 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
MSH6P52701 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC28.85■■■□□ 2.21
MSH6P52701 SAPCD2P4-201ENST00000424595 1171 ntBASIC28.85■■■□□ 2.21
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms