Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CDX1P47902 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC16.76■□□□□ 0.27
CDX1P47902 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
CDX1P47902 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC16.76■□□□□ 0.27
CDX1P47902 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC16.76■□□□□ 0.27
CDX1P47902 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDX1P47902 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CDX1P47902 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC16.76■□□□□ 0.27
CDX1P47902 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CDX1P47902 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC16.76■□□□□ 0.27
CDX1P47902 NTF6G-201ENST00000591094 616 ntBASIC16.76■□□□□ 0.27
CDX1P47902 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC16.76■□□□□ 0.27
CDX1P47902 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CDX1P47902 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CDX1P47902 AC009237.3-201ENST00000393279 1427 ntBASIC16.76■□□□□ 0.27
CDX1P47902 ASL-203ENST00000380839 1765 ntTSL 5 BASIC16.76■□□□□ 0.27
CDX1P47902 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDX1P47902 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CDX1P47902 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDX1P47902 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDX1P47902 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDX1P47902 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDX1P47902 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDX1P47902 AC010542.4-201ENST00000563151 1910 ntBASIC16.75■□□□□ 0.27
CDX1P47902 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC16.75■□□□□ 0.27
CDX1P47902 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC16.75■□□□□ 0.27
CDX1P47902 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDX1P47902 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC16.75■□□□□ 0.27
CDX1P47902 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
CDX1P47902 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDX1P47902 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDX1P47902 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC16.75■□□□□ 0.27
CDX1P47902 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC16.75■□□□□ 0.27
CDX1P47902 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC16.74■□□□□ 0.27
CDX1P47902 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CDX1P47902 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
CDX1P47902 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CDX1P47902 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC16.74■□□□□ 0.27
CDX1P47902 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC16.74■□□□□ 0.27
CDX1P47902 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CDX1P47902 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CDX1P47902 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CDX1P47902 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
CDX1P47902 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CDX1P47902 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
CDX1P47902 CPT2-209ENST00000636935 803 ntTSL 5 BASIC16.74■□□□□ 0.27
CDX1P47902 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC16.74■□□□□ 0.27
CDX1P47902 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC16.74■□□□□ 0.27
CDX1P47902 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC16.74■□□□□ 0.27
CDX1P47902 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC16.73■□□□□ 0.27
CDX1P47902 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
CDX1P47902 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDX1P47902 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDX1P47902 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC16.73■□□□□ 0.27
CDX1P47902 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDX1P47902 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC16.73■□□□□ 0.27
CDX1P47902 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDX1P47902 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CDX1P47902 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDX1P47902 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDX1P47902 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CDX1P47902 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDX1P47902 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDX1P47902 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CDX1P47902 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC16.73■□□□□ 0.27
CDX1P47902 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC16.73■□□□□ 0.27
CDX1P47902 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CDX1P47902 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CDX1P47902 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC16.73■□□□□ 0.27
CDX1P47902 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC16.73■□□□□ 0.27
CDX1P47902 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CDX1P47902 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CDX1P47902 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDX1P47902 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDX1P47902 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDX1P47902 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDX1P47902 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
CDX1P47902 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
CDX1P47902 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
CDX1P47902 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDX1P47902 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDX1P47902 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CDX1P47902 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC16.72■□□□□ 0.27
CDX1P47902 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
CDX1P47902 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
CDX1P47902 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CDX1P47902 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC16.72■□□□□ 0.27
CDX1P47902 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC16.72■□□□□ 0.27
CDX1P47902 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC16.72■□□□□ 0.27
CDX1P47902 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC16.72■□□□□ 0.27
CDX1P47902 AC022517.1-201ENST00000592429 346 ntBASIC16.72■□□□□ 0.27
CDX1P47902 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
CDX1P47902 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CDX1P47902 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CDX1P47902 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC16.72■□□□□ 0.27
CDX1P47902 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CDX1P47902 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDX1P47902 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CDX1P47902 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CDX1P47902 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms