Protein–RNA interactions for Protein: P40968

CDC40, Pre-mRNA-processing factor 17, yeastyeast

Predicted RBP Predictions only

Length 455 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CDC40P40968 YRB1YDR002W 606 nt2.21□□□□□ -2.06
CDC40P40968 YAL026C-AYAL026C-A 438 nt2.21□□□□□ -2.06
CDC40P40968 RPL6AYML073C 531 nt2.21□□□□□ -2.06
CDC40P40968 GIM5YML094W 492 nt2.21□□□□□ -2.06
CDC40P40968 RPS16AYMR143W 432 nt2.21□□□□□ -2.06
CDC40P40968 SNU114YKL173W 3027 nt2.2□□□□□ -2.06
CDC40P40968 RTT10YPL183C 3042 nt2.2□□□□□ -2.06
CDC40P40968 MRP10YDL045W-A 288 nt2.2□□□□□ -2.06
CDC40P40968 DTD1YDL219W 453 nt2.2□□□□□ -2.06
CDC40P40968 GPI19YDR437W 423 nt2.2□□□□□ -2.06
CDC40P40968 RPS17BYDR447C 411 nt2.2□□□□□ -2.06
CDC40P40968 MRM2YGL136C 963 nt2.2□□□□□ -2.06
CDC40P40968 YGR293CYGR293C 462 nt2.2□□□□□ -2.06
CDC40P40968 YLR198CYLR198C 360 nt2.2□□□□□ -2.06
CDC40P40968 SFG1YOR315W 1041 nt2.2□□□□□ -2.06
CDC40P40968 YBR051WYBR051W 351 nt2.2□□□□□ -2.06
CDC40P40968 GIP3YPL137C 3831 nt2.2□□□□□ -2.06
CDC40P40968 HSE1YHL002W 1359 nt2.2□□□□□ -2.06
CDC40P40968 YPR089WYPR089W 2667 nt2.2□□□□□ -2.06
CDC40P40968 DSF2YBR007C 2211 nt2.19□□□□□ -2.06
CDC40P40968 MSB2YGR014W 3921 nt2.19□□□□□ -2.06
CDC40P40968 YCR100CYCR100C 951 nt2.19□□□□□ -2.06
CDC40P40968 ATP16YDL004W 483 nt2.19□□□□□ -2.06
CDC40P40968 ACB1YGR037C 264 nt2.19□□□□□ -2.06
CDC40P40968 KTI11YBL071W-A 249 nt2.19□□□□□ -2.06
CDC40P40968 RPB8YOR224C 441 nt2.19□□□□□ -2.06
CDC40P40968 ATP3YBR039W 936 nt2.19□□□□□ -2.06
CDC40P40968 TPK2YPL203W 1143 nt2.19□□□□□ -2.06
CDC40P40968 AME1YBR211C 975 nt2.19□□□□□ -2.06
CDC40P40968 KSP1YHR082C 3090 nt2.19□□□□□ -2.06
CDC40P40968 SHS1YDL225W 1656 nt2.18□□□□□ -2.06
CDC40P40968 UTP15YMR093W 1542 nt2.18□□□□□ -2.06
CDC40P40968 STE2YFL026W 1296 nt2.18□□□□□ -2.06
CDC40P40968 PRP38YGR075C 729 nt2.18□□□□□ -2.06
CDC40P40968 ILV5YLR355C 1188 nt2.18□□□□□ -2.06
CDC40P40968 COX8YLR395C 237 nt2.18□□□□□ -2.06
CDC40P40968 YBL039W-BYBL039W-B 180 nt2.18□□□□□ -2.06
CDC40P40968 YOL085W-AYOL085W-A 213 nt2.18□□□□□ -2.06
CDC40P40968 MIX23YBL107C 591 nt2.18□□□□□ -2.06
CDC40P40968 YJL070CYJL070C 2667 nt2.18□□□□□ -2.06
CDC40P40968 MLH1YMR167W 2310 nt2.18□□□□□ -2.06
CDC40P40968 YDR186CYDR186C 2634 nt2.18□□□□□ -2.06
CDC40P40968 UBR1YGR184C 5853 nt2.17□□□□□ -2.06
CDC40P40968 ORC1YML065W 2745 nt2.17□□□□□ -2.06
CDC40P40968 YCR108CYCR108C 192 nt2.17□□□□□ -2.06
CDC40P40968 YDR193WYDR193W 399 nt2.17□□□□□ -2.06
CDC40P40968 NTF2YER009W 378 nt2.17□□□□□ -2.06
CDC40P40968 RSM27YGR215W 333 nt2.17□□□□□ -2.06
CDC40P40968 YAL064WYAL064W 285 nt2.17□□□□□ -2.06
CDC40P40968 PAU8YAL068C 363 nt2.17□□□□□ -2.06
CDC40P40968 PAU20YOL161C 363 nt2.17□□□□□ -2.06
CDC40P40968 RXT2YBR095C 1293 nt2.17□□□□□ -2.06
CDC40P40968 YDR179W-AYDR179W-A 1392 nt2.16□□□□□ -2.06
CDC40P40968 UBC13YDR092W 462 nt2.16□□□□□ -2.06
CDC40P40968 tC(GCA)BtC(GCA)B 72 nt2.16□□□□□ -2.06
CDC40P40968 tC(GCA)GtC(GCA)G 72 nt2.16□□□□□ -2.06
CDC40P40968 tC(GCA)P1tC(GCA)P1 72 nt2.16□□□□□ -2.06
CDC40P40968 tC(GCA)P2tC(GCA)P2 72 nt2.16□□□□□ -2.06
CDC40P40968 YKR033CYKR033C 426 nt2.16□□□□□ -2.06
CDC40P40968 RPL25YOL127W 429 nt2.16□□□□□ -2.06
CDC40P40968 YOR097CYOR097C 528 nt2.16□□□□□ -2.06
CDC40P40968 SUS1YBR111W-A 291 nt2.16□□□□□ -2.06
CDC40P40968 NUP100YKL068W 2880 nt2.16□□□□□ -2.06
CDC40P40968 KAR9YPL269W 1935 nt2.16□□□□□ -2.06
CDC40P40968 USO1YDL058W 5373 nt2.16□□□□□ -2.06
CDC40P40968 VPS16YPL045W 2397 nt2.16□□□□□ -2.06
CDC40P40968 POL3YDL102W 3294 nt2.16□□□□□ -2.06
CDC40P40968 RGL1YPL066W 1440 nt2.16□□□□□ -2.06
CDC40P40968 YFH1YDL120W 525 nt2.15□□□□□ -2.07
CDC40P40968 LOC1YFR001W 615 nt2.15□□□□□ -2.07
CDC40P40968 YHR180W-AYHR180W-A 183 nt2.15□□□□□ -2.07
CDC40P40968 DCP1YOL149W 696 nt2.15□□□□□ -2.07
CDC40P40968 RPL33AYPL143W 324 nt2.15□□□□□ -2.07
CDC40P40968 GIS1YDR096W 2685 nt2.15□□□□□ -2.07
CDC40P40968 CDC37YDR168W 1521 nt2.15□□□□□ -2.07
CDC40P40968 INP53YOR109W 3324 nt2.14□□□□□ -2.07
CDC40P40968 PRP6YBR055C 2700 nt2.14□□□□□ -2.07
CDC40P40968 LEU3YLR451W 2661 nt2.14□□□□□ -2.07
CDC40P40968 PEF1YGR058W 1008 nt2.14□□□□□ -2.07
CDC40P40968 FYV4YHR059W 393 nt2.14□□□□□ -2.07
CDC40P40968 ASG7YJL170C 630 nt2.14□□□□□ -2.07
CDC40P40968 YLR217WYLR217W 324 nt2.14□□□□□ -2.07
CDC40P40968 YMR187CYMR187C 1296 nt2.14□□□□□ -2.07
CDC40P40968 YPL119C-AYPL119C-A 264 nt2.14□□□□□ -2.07
CDC40P40968 TRM7YBR061C 933 nt2.14□□□□□ -2.07
CDC40P40968 YBR197CYBR197C 654 nt2.14□□□□□ -2.07
CDC40P40968 PES4YFR023W 1836 nt2.14□□□□□ -2.07
CDC40P40968 YCR013CYCR013C 648 nt2.13□□□□□ -2.07
CDC40P40968 YKL165C-AYKL165C-A 234 nt2.13□□□□□ -2.07
CDC40P40968 YLR285C-AYLR285C-A 171 nt2.13□□□□□ -2.07
CDC40P40968 YPR050CYPR050C 414 nt2.13□□□□□ -2.07
CDC40P40968 TOF1YNL273W 3717 nt2.13□□□□□ -2.07
CDC40P40968 YEL043WYEL043W 2871 nt2.13□□□□□ -2.07
CDC40P40968 PAM1YDR251W 2493 nt2.13□□□□□ -2.07
CDC40P40968 TLC1TLC1 1301 nt2.13□□□□□ -2.07
CDC40P40968 RSE1YML049C 4086 nt2.12□□□□□ -2.07
CDC40P40968 YOR296WYOR296W 3870 nt2.12□□□□□ -2.07
CDC40P40968 SNF12YNR023W 1701 nt2.12□□□□□ -2.07
CDC40P40968 SPF1YEL031W 3648 nt2.12□□□□□ -2.07
CDC40P40968 PPH3YDR075W 927 nt2.12□□□□□ -2.07
Retrieved 100 of 7,029 protein–RNA pairs in 17.6 ms