Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.85■■□□□ 1.09
BDNFP23560 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
BDNFP23560 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
BDNFP23560 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.85■■□□□ 1.09
BDNFP23560 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
BDNFP23560 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
BDNFP23560 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
BDNFP23560 SAPCD2P1-201ENST00000395413 1184 ntBASIC21.85■■□□□ 1.09
BDNFP23560 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC21.85■■□□□ 1.09
BDNFP23560 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
BDNFP23560 AL355472.2-201ENST00000422958 438 ntBASIC21.85■■□□□ 1.09
BDNFP23560 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
BDNFP23560 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.85■■□□□ 1.09
BDNFP23560 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC21.85■■□□□ 1.09
BDNFP23560 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC21.85■■□□□ 1.09
BDNFP23560 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
BDNFP23560 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
BDNFP23560 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.85■■□□□ 1.09
BDNFP23560 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
BDNFP23560 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
BDNFP23560 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
BDNFP23560 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
BDNFP23560 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
BDNFP23560 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
BDNFP23560 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC21.84■■□□□ 1.09
BDNFP23560 PPP1R14BP2-201ENST00000426284 444 ntBASIC21.84■■□□□ 1.09
BDNFP23560 AC073210.2-201ENST00000430369 194 ntBASIC21.84■■□□□ 1.09
BDNFP23560 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
BDNFP23560 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
BDNFP23560 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
BDNFP23560 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
BDNFP23560 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.84■■□□□ 1.09
BDNFP23560 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
BDNFP23560 AL024507.2-201ENST00000606070 2574 ntBASIC21.84■■□□□ 1.09
BDNFP23560 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.83■■□□□ 1.09
BDNFP23560 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
BDNFP23560 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
BDNFP23560 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
BDNFP23560 EXOC3-AS1-202ENST00000623673 1663 ntBASIC21.83■■□□□ 1.09
BDNFP23560 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
BDNFP23560 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.83■■□□□ 1.09
BDNFP23560 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.83■■□□□ 1.09
BDNFP23560 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
BDNFP23560 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
BDNFP23560 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.83■■□□□ 1.09
BDNFP23560 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC21.83■■□□□ 1.09
BDNFP23560 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC21.83■■□□□ 1.09
BDNFP23560 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
BDNFP23560 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.83■■□□□ 1.09
BDNFP23560 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC21.83■■□□□ 1.09
BDNFP23560 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
BDNFP23560 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
BDNFP23560 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.83■■□□□ 1.09
BDNFP23560 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
BDNFP23560 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
BDNFP23560 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.08
BDNFP23560 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
BDNFP23560 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
BDNFP23560 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
BDNFP23560 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC21.82■■□□□ 1.08
BDNFP23560 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
BDNFP23560 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC21.82■■□□□ 1.08
BDNFP23560 AC092118.2-201ENST00000613495 667 ntBASIC21.82■■□□□ 1.08
BDNFP23560 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
BDNFP23560 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
BDNFP23560 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
BDNFP23560 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
BDNFP23560 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
BDNFP23560 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
BDNFP23560 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
BDNFP23560 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
BDNFP23560 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
BDNFP23560 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC21.81■■□□□ 1.08
BDNFP23560 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC21.81■■□□□ 1.08
BDNFP23560 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC21.81■■□□□ 1.08
BDNFP23560 AC100791.3-201ENST00000617619 330 ntBASIC21.81■■□□□ 1.08
BDNFP23560 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
BDNFP23560 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
BDNFP23560 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
BDNFP23560 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
BDNFP23560 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
BDNFP23560 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.81■■□□□ 1.08
BDNFP23560 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
BDNFP23560 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC21.8■■□□□ 1.08
BDNFP23560 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
BDNFP23560 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
BDNFP23560 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
BDNFP23560 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
BDNFP23560 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
BDNFP23560 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
BDNFP23560 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
BDNFP23560 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC21.8■■□□□ 1.08
BDNFP23560 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC21.8■■□□□ 1.08
BDNFP23560 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC21.8■■□□□ 1.08
BDNFP23560 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC21.8■■□□□ 1.08
BDNFP23560 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
BDNFP23560 CYP2T3P-201ENST00000601990 817 ntBASIC21.8■■□□□ 1.08
BDNFP23560 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
BDNFP23560 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC21.8■■□□□ 1.08
BDNFP23560 KRT17P1-201ENST00000399211 1546 ntBASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms