Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC24.41■■□□□ 1.5
HMGB1P09429 DBI-210ENST00000542275 757 ntTSL 5 BASIC24.41■■□□□ 1.5
HMGB1P09429 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC24.41■■□□□ 1.5
HMGB1P09429 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC24.41■■□□□ 1.5
HMGB1P09429 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
HMGB1P09429 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
HMGB1P09429 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
HMGB1P09429 STAC-204ENST00000457375 1366 ntTSL 2 BASIC24.41■■□□□ 1.5
HMGB1P09429 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
HMGB1P09429 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
HMGB1P09429 AC007225.1-201ENST00000566331 1836 ntBASIC24.4■■□□□ 1.5
HMGB1P09429 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
HMGB1P09429 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC24.4■■□□□ 1.5
HMGB1P09429 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
HMGB1P09429 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
HMGB1P09429 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
HMGB1P09429 STX7-201ENST00000367937 1090 ntTSL 5 BASIC24.4■■□□□ 1.5
HMGB1P09429 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
HMGB1P09429 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC24.4■■□□□ 1.5
HMGB1P09429 MIR5787-201ENST00000611784 55 ntBASIC24.4■■□□□ 1.5
HMGB1P09429 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC24.4■■□□□ 1.5
HMGB1P09429 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
HMGB1P09429 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
HMGB1P09429 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
HMGB1P09429 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
HMGB1P09429 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC24.39■■□□□ 1.5
HMGB1P09429 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.5
HMGB1P09429 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
HMGB1P09429 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC24.39■■□□□ 1.5
HMGB1P09429 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
HMGB1P09429 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
HMGB1P09429 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.49
HMGB1P09429 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
HMGB1P09429 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC24.39■■□□□ 1.49
HMGB1P09429 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC24.39■■□□□ 1.49
HMGB1P09429 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
HMGB1P09429 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.49
HMGB1P09429 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC24.39■■□□□ 1.49
HMGB1P09429 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
HMGB1P09429 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
HMGB1P09429 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC24.38■■□□□ 1.49
HMGB1P09429 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
HMGB1P09429 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC24.38■■□□□ 1.49
HMGB1P09429 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
HMGB1P09429 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
HMGB1P09429 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
HMGB1P09429 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
HMGB1P09429 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC24.38■■□□□ 1.49
HMGB1P09429 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC24.38■■□□□ 1.49
HMGB1P09429 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC24.38■■□□□ 1.49
HMGB1P09429 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
HMGB1P09429 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC24.38■■□□□ 1.49
HMGB1P09429 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC24.38■■□□□ 1.49
HMGB1P09429 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC24.38■■□□□ 1.49
HMGB1P09429 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC24.37■■□□□ 1.49
HMGB1P09429 FEM1AP1-201ENST00000431297 1995 ntBASIC24.37■■□□□ 1.49
HMGB1P09429 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC24.37■■□□□ 1.49
HMGB1P09429 HSCB-202ENST00000398941 955 ntTSL 2 BASIC24.37■■□□□ 1.49
HMGB1P09429 GXYLT1P2-201ENST00000433312 1230 ntBASIC24.37■■□□□ 1.49
HMGB1P09429 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC24.37■■□□□ 1.49
HMGB1P09429 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
HMGB1P09429 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC24.37■■□□□ 1.49
HMGB1P09429 AC137761.2-201ENST00000561729 223 ntBASIC24.37■■□□□ 1.49
HMGB1P09429 AC145350.3-201ENST00000569033 163 ntBASIC24.37■■□□□ 1.49
HMGB1P09429 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC24.37■■□□□ 1.49
HMGB1P09429 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC24.37■■□□□ 1.49
HMGB1P09429 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
HMGB1P09429 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC24.37■■□□□ 1.49
HMGB1P09429 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC24.37■■□□□ 1.49
HMGB1P09429 AC027702.1-201ENST00000563810 1770 ntBASIC24.37■■□□□ 1.49
HMGB1P09429 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC24.36■■□□□ 1.49
HMGB1P09429 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
HMGB1P09429 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
HMGB1P09429 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC24.36■■□□□ 1.49
HMGB1P09429 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
HMGB1P09429 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
HMGB1P09429 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
HMGB1P09429 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC24.36■■□□□ 1.49
HMGB1P09429 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
HMGB1P09429 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
HMGB1P09429 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
HMGB1P09429 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
HMGB1P09429 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC24.35■■□□□ 1.49
HMGB1P09429 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC24.35■■□□□ 1.49
HMGB1P09429 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
HMGB1P09429 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC24.35■■□□□ 1.49
HMGB1P09429 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
HMGB1P09429 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
HMGB1P09429 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
HMGB1P09429 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC24.35■■□□□ 1.49
HMGB1P09429 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
HMGB1P09429 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC24.35■■□□□ 1.49
HMGB1P09429 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
HMGB1P09429 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC24.35■■□□□ 1.49
HMGB1P09429 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC24.35■■□□□ 1.49
HMGB1P09429 AC010536.3-201ENST00000620306 533 ntBASIC24.35■■□□□ 1.49
HMGB1P09429 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC24.35■■□□□ 1.49
HMGB1P09429 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
HMGB1P09429 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
HMGB1P09429 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms