Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC4P09017 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC4P09017 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC4P09017 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.28■□□□□ 0.84
HOXC4P09017 PGM5P4-201ENST00000421970 445 ntBASIC20.28■□□□□ 0.84
HOXC4P09017 TSPY20P-201ENST00000450910 630 ntBASIC20.28■□□□□ 0.84
HOXC4P09017 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
HOXC4P09017 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.28■□□□□ 0.84
HOXC4P09017 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
HOXC4P09017 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC4P09017 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.27■□□□□ 0.84
HOXC4P09017 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.27■□□□□ 0.84
HOXC4P09017 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.27■□□□□ 0.84
HOXC4P09017 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
HOXC4P09017 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC4P09017 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC4P09017 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.84
HOXC4P09017 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
HOXC4P09017 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.27■□□□□ 0.84
HOXC4P09017 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC4P09017 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC4P09017 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.27■□□□□ 0.84
HOXC4P09017 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.27■□□□□ 0.84
HOXC4P09017 RNA5SP413-201ENST00000516373 109 ntBASIC20.27■□□□□ 0.84
HOXC4P09017 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.27■□□□□ 0.84
HOXC4P09017 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC4P09017 AC105020.6-201ENST00000621523 1217 ntBASIC20.27■□□□□ 0.84
HOXC4P09017 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.27■□□□□ 0.84
HOXC4P09017 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC4P09017 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC4P09017 AC011484.1-201ENST00000377652 1995 ntBASIC20.26■□□□□ 0.83
HOXC4P09017 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC4P09017 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC4P09017 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC4P09017 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC4P09017 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
HOXC4P09017 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC4P09017 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC4P09017 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.26■□□□□ 0.83
HOXC4P09017 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
HOXC4P09017 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.26■□□□□ 0.83
HOXC4P09017 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.26■□□□□ 0.83
HOXC4P09017 TMEM191A-211ENST00000637163 1067 ntBASIC20.26■□□□□ 0.83
HOXC4P09017 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.26■□□□□ 0.83
HOXC4P09017 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.26■□□□□ 0.83
HOXC4P09017 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
HOXC4P09017 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.26■□□□□ 0.83
HOXC4P09017 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC4P09017 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC4P09017 FBXW4P1-201ENST00000426721 2239 ntBASIC20.26■□□□□ 0.83
HOXC4P09017 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.25■□□□□ 0.83
HOXC4P09017 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.25■□□□□ 0.83
HOXC4P09017 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC4P09017 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC4P09017 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.25■□□□□ 0.83
HOXC4P09017 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC20.25■□□□□ 0.83
HOXC4P09017 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
HOXC4P09017 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC4P09017 MIR4651-201ENST00000582622 73 ntBASIC20.25■□□□□ 0.83
HOXC4P09017 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC4P09017 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
HOXC4P09017 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC4P09017 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC4P09017 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC4P09017 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.24■□□□□ 0.83
HOXC4P09017 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
HOXC4P09017 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC4P09017 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.24■□□□□ 0.83
HOXC4P09017 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC4P09017 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC4P09017 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC4P09017 FAM201B-201ENST00000458407 597 ntBASIC20.24■□□□□ 0.83
HOXC4P09017 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.24■□□□□ 0.83
HOXC4P09017 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.24■□□□□ 0.83
HOXC4P09017 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC4P09017 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC4P09017 HLA-B-256ENST00000639848 1089 ntBASIC20.24■□□□□ 0.83
HOXC4P09017 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC4P09017 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
HOXC4P09017 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.24■□□□□ 0.83
HOXC4P09017 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
HOXC4P09017 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.24■□□□□ 0.83
HOXC4P09017 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
HOXC4P09017 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC4P09017 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC4P09017 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC4P09017 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC4P09017 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC20.23■□□□□ 0.83
HOXC4P09017 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
HOXC4P09017 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC4P09017 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.23■□□□□ 0.83
HOXC4P09017 POU5F1P3-201ENST00000428824 1078 ntBASIC20.23■□□□□ 0.83
HOXC4P09017 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC4P09017 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.23■□□□□ 0.83
HOXC4P09017 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC4P09017 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
HOXC4P09017 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.23■□□□□ 0.83
HOXC4P09017 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.23■□□□□ 0.83
HOXC4P09017 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.23■□□□□ 0.83
HOXC4P09017 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms