Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
APOEP02649 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC21.65■■□□□ 1.06
APOEP02649 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
APOEP02649 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
APOEP02649 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
APOEP02649 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC21.65■■□□□ 1.06
APOEP02649 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
APOEP02649 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
APOEP02649 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.65■■□□□ 1.06
APOEP02649 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
APOEP02649 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
APOEP02649 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
APOEP02649 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
APOEP02649 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
APOEP02649 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC21.64■■□□□ 1.05
APOEP02649 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC21.64■■□□□ 1.05
APOEP02649 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
APOEP02649 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC21.64■■□□□ 1.05
APOEP02649 FEM1AP4-201ENST00000443167 1987 ntBASIC21.64■■□□□ 1.05
APOEP02649 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
APOEP02649 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
APOEP02649 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
APOEP02649 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
APOEP02649 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC21.64■■□□□ 1.05
APOEP02649 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.63■■□□□ 1.05
APOEP02649 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
APOEP02649 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
APOEP02649 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
APOEP02649 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
APOEP02649 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
APOEP02649 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC21.63■■□□□ 1.05
APOEP02649 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC21.63■■□□□ 1.05
APOEP02649 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
APOEP02649 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21.63■■□□□ 1.05
APOEP02649 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.63■■□□□ 1.05
APOEP02649 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
APOEP02649 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21.63■■□□□ 1.05
APOEP02649 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC21.63■■□□□ 1.05
APOEP02649 RAP2CP1-201ENST00000605103 478 ntBASIC21.63■■□□□ 1.05
APOEP02649 MAZ-216ENST00000616501 991 ntTSL 5 BASIC21.63■■□□□ 1.05
APOEP02649 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
APOEP02649 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
APOEP02649 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
APOEP02649 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
APOEP02649 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
APOEP02649 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
APOEP02649 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
APOEP02649 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.62■■□□□ 1.05
APOEP02649 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC21.62■■□□□ 1.05
APOEP02649 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC21.62■■□□□ 1.05
APOEP02649 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.62■■□□□ 1.05
APOEP02649 CNN2P6-201ENST00000439038 900 ntBASIC21.62■■□□□ 1.05
APOEP02649 AC007322.4-201ENST00000509611 723 ntBASIC21.62■■□□□ 1.05
APOEP02649 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
APOEP02649 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
APOEP02649 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.62■■□□□ 1.05
APOEP02649 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
APOEP02649 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
APOEP02649 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
APOEP02649 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
APOEP02649 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.61■■□□□ 1.05
APOEP02649 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
APOEP02649 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
APOEP02649 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
APOEP02649 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
APOEP02649 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
APOEP02649 AC006970.2-201ENST00000450065 779 ntBASIC21.61■■□□□ 1.05
APOEP02649 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC21.61■■□□□ 1.05
APOEP02649 PARP1-210ENST00000629232 477 ntTSL 5 BASIC21.61■■□□□ 1.05
APOEP02649 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
APOEP02649 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
APOEP02649 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.6■■□□□ 1.05
APOEP02649 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
APOEP02649 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
APOEP02649 AF106564.1-201ENST00000607058 2553 ntBASIC21.6■■□□□ 1.05
APOEP02649 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
APOEP02649 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.6■■□□□ 1.05
APOEP02649 MIR663A-201ENST00000385250 93 ntBASIC21.6■■□□□ 1.05
APOEP02649 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.6■■□□□ 1.05
APOEP02649 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.6■■□□□ 1.05
APOEP02649 AC005181.1-201ENST00000604782 1256 ntBASIC21.6■■□□□ 1.05
APOEP02649 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
APOEP02649 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
APOEP02649 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.59■■□□□ 1.05
APOEP02649 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.59■■□□□ 1.05
APOEP02649 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
APOEP02649 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
APOEP02649 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
APOEP02649 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.59■■□□□ 1.05
APOEP02649 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.59■■□□□ 1.05
APOEP02649 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
APOEP02649 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
APOEP02649 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
APOEP02649 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
APOEP02649 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
APOEP02649 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
APOEP02649 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
APOEP02649 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
APOEP02649 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
APOEP02649 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms