Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TNFP01375 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
TNFP01375 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
TNFP01375 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TNFP01375 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TNFP01375 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
TNFP01375 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
TNFP01375 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TNFP01375 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TNFP01375 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.25■□□□□ 0.83
TNFP01375 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
TNFP01375 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC20.25■□□□□ 0.83
TNFP01375 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.25■□□□□ 0.83
TNFP01375 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.25■□□□□ 0.83
TNFP01375 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TNFP01375 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.25■□□□□ 0.83
TNFP01375 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
TNFP01375 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.25■□□□□ 0.83
TNFP01375 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TNFP01375 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.25■□□□□ 0.83
TNFP01375 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TNFP01375 CYP21A1P-202ENST00000354927 1481 ntBASIC20.24■□□□□ 0.83
TNFP01375 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TNFP01375 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.24■□□□□ 0.83
TNFP01375 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TNFP01375 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TNFP01375 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.24■□□□□ 0.83
TNFP01375 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.24■□□□□ 0.83
TNFP01375 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TNFP01375 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TNFP01375 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
TNFP01375 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
TNFP01375 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.24■□□□□ 0.83
TNFP01375 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TNFP01375 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TNFP01375 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
TNFP01375 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TNFP01375 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TNFP01375 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TNFP01375 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TNFP01375 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
TNFP01375 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TNFP01375 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TNFP01375 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
TNFP01375 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
TNFP01375 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TNFP01375 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TNFP01375 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.23■□□□□ 0.83
TNFP01375 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TNFP01375 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.23■□□□□ 0.83
TNFP01375 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
TNFP01375 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.23■□□□□ 0.83
TNFP01375 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TNFP01375 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
TNFP01375 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
TNFP01375 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
TNFP01375 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TNFP01375 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TNFP01375 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TNFP01375 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TNFP01375 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TNFP01375 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TNFP01375 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TNFP01375 KRT18P29-201ENST00000397031 1267 ntBASIC20.22■□□□□ 0.83
TNFP01375 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.22■□□□□ 0.83
TNFP01375 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TNFP01375 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TNFP01375 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.22■□□□□ 0.83
TNFP01375 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TNFP01375 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TNFP01375 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.22■□□□□ 0.83
TNFP01375 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.22■□□□□ 0.83
TNFP01375 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TNFP01375 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TNFP01375 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TNFP01375 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.22■□□□□ 0.83
TNFP01375 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TNFP01375 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TNFP01375 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TNFP01375 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.22■□□□□ 0.83
TNFP01375 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.22■□□□□ 0.83
TNFP01375 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.22■□□□□ 0.83
TNFP01375 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TNFP01375 AC244015.2-201ENST00000616358 1861 ntBASIC20.22■□□□□ 0.83
TNFP01375 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TNFP01375 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.22■□□□□ 0.83
TNFP01375 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TNFP01375 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.21■□□□□ 0.83
TNFP01375 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TNFP01375 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
TNFP01375 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TNFP01375 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TNFP01375 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.21■□□□□ 0.83
TNFP01375 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.21■□□□□ 0.83
TNFP01375 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.21■□□□□ 0.83
TNFP01375 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
TNFP01375 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.21■□□□□ 0.83
TNFP01375 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TNFP01375 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
TNFP01375 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms