Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
PGK1P00558 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.3
PGK1P00558 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC23.14■■□□□ 1.29
PGK1P00558 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
PGK1P00558 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC23.14■■□□□ 1.29
PGK1P00558 FAM210CP-201ENST00000445714 574 ntBASIC23.14■■□□□ 1.29
PGK1P00558 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC23.14■■□□□ 1.29
PGK1P00558 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
PGK1P00558 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
PGK1P00558 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
PGK1P00558 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
PGK1P00558 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC23.13■■□□□ 1.29
PGK1P00558 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC23.13■■□□□ 1.29
PGK1P00558 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
PGK1P00558 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
PGK1P00558 FAM99A-202ENST00000538190 1989 ntBASIC23.13■■□□□ 1.29
PGK1P00558 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
PGK1P00558 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
PGK1P00558 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
PGK1P00558 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC23.13■■□□□ 1.29
PGK1P00558 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC23.13■■□□□ 1.29
PGK1P00558 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
PGK1P00558 TK2-204ENST00000525974 1178 ntTSL 2 BASIC23.13■■□□□ 1.29
PGK1P00558 REXO2-216ENST00000544196 452 ntTSL 3 BASIC23.13■■□□□ 1.29
PGK1P00558 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
PGK1P00558 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
PGK1P00558 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
PGK1P00558 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
PGK1P00558 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
PGK1P00558 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC23.12■■□□□ 1.29
PGK1P00558 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
PGK1P00558 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
PGK1P00558 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
PGK1P00558 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
PGK1P00558 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
PGK1P00558 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
PGK1P00558 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
PGK1P00558 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
PGK1P00558 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC23.12■■□□□ 1.29
PGK1P00558 C1orf229-201ENST00000623686 2258 ntBASIC23.12■■□□□ 1.29
PGK1P00558 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC23.12■■□□□ 1.29
PGK1P00558 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
PGK1P00558 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC23.11■■□□□ 1.29
PGK1P00558 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
PGK1P00558 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
PGK1P00558 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
PGK1P00558 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
PGK1P00558 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
PGK1P00558 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
PGK1P00558 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
PGK1P00558 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC23.11■■□□□ 1.29
PGK1P00558 TSPY7P-201ENST00000431358 1114 ntBASIC23.11■■□□□ 1.29
PGK1P00558 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC23.11■■□□□ 1.29
PGK1P00558 RPS20-210ENST00000523936 899 ntTSL 2 BASIC23.11■■□□□ 1.29
PGK1P00558 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
PGK1P00558 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
PGK1P00558 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC23.11■■□□□ 1.29
PGK1P00558 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
PGK1P00558 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC23.11■■□□□ 1.29
PGK1P00558 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
PGK1P00558 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
PGK1P00558 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC23.11■■□□□ 1.29
PGK1P00558 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
PGK1P00558 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC23.1■■□□□ 1.29
PGK1P00558 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PGK1P00558 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
PGK1P00558 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC23.1■■□□□ 1.29
PGK1P00558 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
PGK1P00558 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PGK1P00558 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PGK1P00558 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC23.1■■□□□ 1.29
PGK1P00558 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
PGK1P00558 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
PGK1P00558 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PGK1P00558 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
PGK1P00558 THEM4-205ENST00000489410 643 ntTSL 2 BASIC23.1■■□□□ 1.29
PGK1P00558 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
PGK1P00558 C2orf69P4-201ENST00000565394 541 ntBASIC23.1■■□□□ 1.29
PGK1P00558 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC23.1■■□□□ 1.29
PGK1P00558 AC233702.5-201ENST00000584107 538 ntBASIC23.1■■□□□ 1.29
PGK1P00558 MTDHP1-201ENST00000605323 784 ntBASIC23.1■■□□□ 1.29
PGK1P00558 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC23.1■■□□□ 1.29
PGK1P00558 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
PGK1P00558 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
PGK1P00558 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC23.1■■□□□ 1.29
PGK1P00558 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
PGK1P00558 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PGK1P00558 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC23.09■■□□□ 1.29
PGK1P00558 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC23.09■■□□□ 1.29
PGK1P00558 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
PGK1P00558 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PGK1P00558 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PGK1P00558 RPS2P55-201ENST00000397318 883 ntBASIC23.09■■□□□ 1.29
PGK1P00558 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
PGK1P00558 AC107956.1-201ENST00000494359 873 ntBASIC23.09■■□□□ 1.29
PGK1P00558 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC23.09■■□□□ 1.29
PGK1P00558 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC23.09■■□□□ 1.29
PGK1P00558 BX088651.1-201ENST00000540551 451 ntBASIC23.09■■□□□ 1.29
PGK1P00558 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC23.09■■□□□ 1.29
PGK1P00558 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms