Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SIX3O95343 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SIX3O95343 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SIX3O95343 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
SIX3O95343 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SIX3O95343 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SIX3O95343 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SIX3O95343 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.19■□□□□ 0.82
SIX3O95343 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SIX3O95343 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SIX3O95343 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SIX3O95343 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
SIX3O95343 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SIX3O95343 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SIX3O95343 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SIX3O95343 POU5F1P4-201ENST00000413175 1085 ntBASIC20.19■□□□□ 0.82
SIX3O95343 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
SIX3O95343 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SIX3O95343 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.19■□□□□ 0.82
SIX3O95343 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.19■□□□□ 0.82
SIX3O95343 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SIX3O95343 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SIX3O95343 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SIX3O95343 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.19■□□□□ 0.82
SIX3O95343 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SIX3O95343 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
SIX3O95343 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.19■□□□□ 0.82
SIX3O95343 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SIX3O95343 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
SIX3O95343 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
SIX3O95343 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SIX3O95343 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
SIX3O95343 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SIX3O95343 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SIX3O95343 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.18■□□□□ 0.82
SIX3O95343 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SIX3O95343 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SIX3O95343 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SIX3O95343 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.18■□□□□ 0.82
SIX3O95343 AC138907.5-202ENST00000569484 235 ntBASIC20.18■□□□□ 0.82
SIX3O95343 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.18■□□□□ 0.82
SIX3O95343 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SIX3O95343 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SIX3O95343 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.18■□□□□ 0.82
SIX3O95343 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.18■□□□□ 0.82
SIX3O95343 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SIX3O95343 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
SIX3O95343 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.18■□□□□ 0.82
SIX3O95343 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
SIX3O95343 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.18■□□□□ 0.82
SIX3O95343 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SIX3O95343 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SIX3O95343 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
SIX3O95343 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
SIX3O95343 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SIX3O95343 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.17■□□□□ 0.82
SIX3O95343 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.17■□□□□ 0.82
SIX3O95343 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SIX3O95343 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
SIX3O95343 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.17■□□□□ 0.82
SIX3O95343 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SIX3O95343 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.17■□□□□ 0.82
SIX3O95343 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.17■□□□□ 0.82
SIX3O95343 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.17■□□□□ 0.82
SIX3O95343 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SIX3O95343 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SIX3O95343 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.17■□□□□ 0.82
SIX3O95343 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
SIX3O95343 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
SIX3O95343 LINC02228-203ENST00000641970 1355 ntBASIC20.17■□□□□ 0.82
SIX3O95343 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SIX3O95343 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SIX3O95343 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX3O95343 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX3O95343 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX3O95343 AC020907.5-201ENST00000624372 1936 ntBASIC20.16■□□□□ 0.82
SIX3O95343 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX3O95343 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
SIX3O95343 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.16■□□□□ 0.82
SIX3O95343 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.16■□□□□ 0.82
SIX3O95343 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
SIX3O95343 RARRES2P11-201ENST00000635158 484 ntBASIC20.16■□□□□ 0.82
SIX3O95343 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
SIX3O95343 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
SIX3O95343 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SIX3O95343 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.16■□□□□ 0.82
SIX3O95343 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.16■□□□□ 0.82
SIX3O95343 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
SIX3O95343 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX3O95343 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
SIX3O95343 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SIX3O95343 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SIX3O95343 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SIX3O95343 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SIX3O95343 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SIX3O95343 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SIX3O95343 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
SIX3O95343 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SIX3O95343 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.15■□□□□ 0.82
SIX3O95343 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms