Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 PARP1-202ENST00000366792 553 ntTSL 3 BASIC24.04■■□□□ 1.44
CDKL5O76039 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC24.04■■□□□ 1.44
CDKL5O76039 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CDKL5O76039 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC24.04■■□□□ 1.44
CDKL5O76039 DBI-210ENST00000542275 757 ntTSL 5 BASIC24.04■■□□□ 1.44
CDKL5O76039 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC24.04■■□□□ 1.44
CDKL5O76039 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
CDKL5O76039 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
CDKL5O76039 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC24.04■■□□□ 1.44
CDKL5O76039 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CDKL5O76039 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CDKL5O76039 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CDKL5O76039 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CDKL5O76039 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CDKL5O76039 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CDKL5O76039 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CDKL5O76039 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
CDKL5O76039 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
CDKL5O76039 KRT18P11-201ENST00000435214 1283 ntBASIC24.03■■□□□ 1.44
CDKL5O76039 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC24.03■■□□□ 1.44
CDKL5O76039 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC24.03■■□□□ 1.44
CDKL5O76039 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC24.03■■□□□ 1.44
CDKL5O76039 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CDKL5O76039 MIR5787-201ENST00000611784 55 ntBASIC24.03■■□□□ 1.44
CDKL5O76039 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CDKL5O76039 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CDKL5O76039 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
CDKL5O76039 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CDKL5O76039 AC116050.2-201ENST00000612102 1779 ntBASIC24.03■■□□□ 1.44
CDKL5O76039 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC24.03■■□□□ 1.44
CDKL5O76039 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CDKL5O76039 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC24.03■■□□□ 1.44
CDKL5O76039 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
CDKL5O76039 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC24.02■■□□□ 1.44
CDKL5O76039 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC24.02■■□□□ 1.44
CDKL5O76039 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CDKL5O76039 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CDKL5O76039 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC24.02■■□□□ 1.44
CDKL5O76039 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
CDKL5O76039 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC24.02■■□□□ 1.44
CDKL5O76039 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CDKL5O76039 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CDKL5O76039 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CDKL5O76039 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CDKL5O76039 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC24.02■■□□□ 1.44
CDKL5O76039 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CDKL5O76039 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CDKL5O76039 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
CDKL5O76039 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CDKL5O76039 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CDKL5O76039 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CDKL5O76039 STX7-201ENST00000367937 1090 ntTSL 5 BASIC24.01■■□□□ 1.43
CDKL5O76039 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC24.01■■□□□ 1.43
CDKL5O76039 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC24.01■■□□□ 1.43
CDKL5O76039 GXYLT1P2-201ENST00000433312 1230 ntBASIC24.01■■□□□ 1.43
CDKL5O76039 AC137761.2-201ENST00000561729 223 ntBASIC24.01■■□□□ 1.43
CDKL5O76039 AC145350.3-201ENST00000569033 163 ntBASIC24.01■■□□□ 1.43
CDKL5O76039 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CDKL5O76039 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC24.01■■□□□ 1.43
CDKL5O76039 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CDKL5O76039 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC24.01■■□□□ 1.43
CDKL5O76039 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC24■■□□□ 1.43
CDKL5O76039 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
CDKL5O76039 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
CDKL5O76039 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CDKL5O76039 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC24■■□□□ 1.43
CDKL5O76039 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC24■■□□□ 1.43
CDKL5O76039 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC24■■□□□ 1.43
CDKL5O76039 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC24■■□□□ 1.43
CDKL5O76039 CD44-222ENST00000526025 1052 ntTSL 2 BASIC24■■□□□ 1.43
CDKL5O76039 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC24■■□□□ 1.43
CDKL5O76039 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC24■■□□□ 1.43
CDKL5O76039 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC24■■□□□ 1.43
CDKL5O76039 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC24■■□□□ 1.43
CDKL5O76039 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC24■■□□□ 1.43
CDKL5O76039 STAC-204ENST00000457375 1366 ntTSL 2 BASIC24■■□□□ 1.43
CDKL5O76039 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
CDKL5O76039 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CDKL5O76039 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC23.99■■□□□ 1.43
CDKL5O76039 ME2-216ENST00000639850 2331 ntTSL 5 BASIC23.99■■□□□ 1.43
CDKL5O76039 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
CDKL5O76039 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CDKL5O76039 AC091799.1-201ENST00000422823 811 ntBASIC23.99■■□□□ 1.43
CDKL5O76039 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CDKL5O76039 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC23.99■■□□□ 1.43
CDKL5O76039 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC23.99■■□□□ 1.43
CDKL5O76039 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC23.99■■□□□ 1.43
CDKL5O76039 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CDKL5O76039 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC23.99■■□□□ 1.43
CDKL5O76039 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
CDKL5O76039 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CDKL5O76039 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC23.99■■□□□ 1.43
CDKL5O76039 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC23.98■■□□□ 1.43
CDKL5O76039 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
CDKL5O76039 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CDKL5O76039 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CDKL5O76039 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CDKL5O76039 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CDKL5O76039 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CDKL5O76039 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms