Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC29.54■■■□□ 2.32
NPHP4O75161 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC29.53■■■□□ 2.32
NPHP4O75161 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC29.53■■■□□ 2.32
NPHP4O75161 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC29.53■■■□□ 2.32
NPHP4O75161 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC29.53■■■□□ 2.32
NPHP4O75161 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC29.53■■■□□ 2.32
NPHP4O75161 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC29.53■■■□□ 2.32
NPHP4O75161 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC29.53■■■□□ 2.32
NPHP4O75161 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC29.53■■■□□ 2.32
NPHP4O75161 AC113347.1-201ENST00000413321 391 ntBASIC29.53■■■□□ 2.32
NPHP4O75161 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC29.53■■■□□ 2.32
NPHP4O75161 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC29.53■■■□□ 2.32
NPHP4O75161 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC29.53■■■□□ 2.32
NPHP4O75161 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
NPHP4O75161 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC29.52■■■□□ 2.32
NPHP4O75161 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
NPHP4O75161 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
NPHP4O75161 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC29.52■■■□□ 2.32
NPHP4O75161 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
NPHP4O75161 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC29.52■■■□□ 2.32
NPHP4O75161 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC29.52■■■□□ 2.32
NPHP4O75161 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC29.52■■■□□ 2.32
NPHP4O75161 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
NPHP4O75161 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
NPHP4O75161 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC29.52■■■□□ 2.32
NPHP4O75161 KRT8P9-201ENST00000558927 1449 ntBASIC29.52■■■□□ 2.32
NPHP4O75161 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
NPHP4O75161 KRT18P57-201ENST00000443599 1254 ntBASIC29.51■■■□□ 2.31
NPHP4O75161 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC29.51■■■□□ 2.31
NPHP4O75161 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC29.51■■■□□ 2.31
NPHP4O75161 RBM42-202ENST00000586618 771 ntTSL 3 BASIC29.51■■■□□ 2.31
NPHP4O75161 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC29.51■■■□□ 2.31
NPHP4O75161 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC29.51■■■□□ 2.31
NPHP4O75161 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
NPHP4O75161 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC29.5■■■□□ 2.31
NPHP4O75161 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC29.5■■■□□ 2.31
NPHP4O75161 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC29.5■■■□□ 2.31
NPHP4O75161 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC29.5■■■□□ 2.31
NPHP4O75161 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC29.5■■■□□ 2.31
NPHP4O75161 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC29.5■■■□□ 2.31
NPHP4O75161 AC006557.6-201ENST00000623071 864 ntBASIC29.5■■■□□ 2.31
NPHP4O75161 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
NPHP4O75161 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
NPHP4O75161 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
NPHP4O75161 AL355355.2-201ENST00000442321 338 ntBASIC29.49■■■□□ 2.31
NPHP4O75161 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC29.49■■■□□ 2.31
NPHP4O75161 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC29.49■■■□□ 2.31
NPHP4O75161 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC29.49■■■□□ 2.31
NPHP4O75161 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC29.49■■■□□ 2.31
NPHP4O75161 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC29.49■■■□□ 2.31
NPHP4O75161 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
NPHP4O75161 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC29.49■■■□□ 2.31
NPHP4O75161 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
NPHP4O75161 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
NPHP4O75161 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
NPHP4O75161 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
NPHP4O75161 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC29.48■■■□□ 2.31
NPHP4O75161 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
NPHP4O75161 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC29.48■■■□□ 2.31
NPHP4O75161 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC29.48■■■□□ 2.31
NPHP4O75161 AC087633.2-202ENST00000565166 1439 ntBASIC29.48■■■□□ 2.31
NPHP4O75161 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
NPHP4O75161 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
NPHP4O75161 AC087742.1-201ENST00000575880 1738 ntBASIC29.48■■■□□ 2.31
NPHP4O75161 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC29.47■■■□□ 2.31
NPHP4O75161 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
NPHP4O75161 AF186192.3-201ENST00000583427 947 ntBASIC29.47■■■□□ 2.31
NPHP4O75161 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC29.47■■■□□ 2.31
NPHP4O75161 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC29.47■■■□□ 2.31
NPHP4O75161 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC29.47■■■□□ 2.31
NPHP4O75161 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC29.47■■■□□ 2.31
NPHP4O75161 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC29.47■■■□□ 2.31
NPHP4O75161 C11orf96-202ENST00000528572 1834 ntBASIC29.47■■■□□ 2.31
NPHP4O75161 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC29.46■■■□□ 2.31
NPHP4O75161 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC29.46■■■□□ 2.31
NPHP4O75161 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC29.46■■■□□ 2.31
NPHP4O75161 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC29.46■■■□□ 2.31
NPHP4O75161 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC29.46■■■□□ 2.31
NPHP4O75161 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC29.46■■■□□ 2.31
NPHP4O75161 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
NPHP4O75161 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
NPHP4O75161 AC139530.1-201ENST00000575312 1977 ntBASIC29.46■■■□□ 2.31
NPHP4O75161 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC29.46■■■□□ 2.31
NPHP4O75161 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
NPHP4O75161 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC29.45■■■□□ 2.31
NPHP4O75161 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
NPHP4O75161 AC020928.2-201ENST00000588717 2197 ntBASIC29.45■■■□□ 2.31
NPHP4O75161 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC29.45■■■□□ 2.31
NPHP4O75161 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC29.45■■■□□ 2.3
NPHP4O75161 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC29.45■■■□□ 2.3
NPHP4O75161 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC29.45■■■□□ 2.3
NPHP4O75161 RPS15-203ENST00000586096 570 ntTSL 2 BASIC29.45■■■□□ 2.3
NPHP4O75161 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC29.44■■■□□ 2.3
NPHP4O75161 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC29.44■■■□□ 2.3
NPHP4O75161 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC29.44■■■□□ 2.3
NPHP4O75161 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC29.44■■■□□ 2.3
NPHP4O75161 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC29.44■■■□□ 2.3
NPHP4O75161 RBM17P1-201ENST00000453646 1190 ntBASIC29.44■■■□□ 2.3
NPHP4O75161 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
NPHP4O75161 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC29.44■■■□□ 2.3
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms