Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC17.55■□□□□ 0.4
SDCBPO00560 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC17.55■□□□□ 0.4
SDCBPO00560 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDCBPO00560 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDCBPO00560 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDCBPO00560 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDCBPO00560 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDCBPO00560 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDCBPO00560 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDCBPO00560 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SDCBPO00560 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC17.54■□□□□ 0.4
SDCBPO00560 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SDCBPO00560 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC17.54■□□□□ 0.4
SDCBPO00560 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
SDCBPO00560 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC17.54■□□□□ 0.4
SDCBPO00560 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDCBPO00560 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDCBPO00560 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDCBPO00560 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SDCBPO00560 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC17.54■□□□□ 0.4
SDCBPO00560 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SDCBPO00560 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SDCBPO00560 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SDCBPO00560 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDCBPO00560 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDCBPO00560 ME2-218ENST00000640965 2476 ntTSL 5 BASIC17.54■□□□□ 0.4
SDCBPO00560 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDCBPO00560 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SDCBPO00560 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.54■□□□□ 0.4
SDCBPO00560 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDCBPO00560 NARF-205ENST00000412079 1760 ntTSL 5 BASIC17.53■□□□□ 0.4
SDCBPO00560 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDCBPO00560 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDCBPO00560 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SDCBPO00560 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SDCBPO00560 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC17.53■□□□□ 0.4
SDCBPO00560 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDCBPO00560 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDCBPO00560 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC17.53■□□□□ 0.4
SDCBPO00560 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
SDCBPO00560 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC17.53■□□□□ 0.4
SDCBPO00560 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC17.53■□□□□ 0.4
SDCBPO00560 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC17.53■□□□□ 0.4
SDCBPO00560 AL136967.2-201ENST00000623968 743 ntBASIC17.53■□□□□ 0.4
SDCBPO00560 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SDCBPO00560 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDCBPO00560 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17.53■□□□□ 0.4
SDCBPO00560 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC17.53■□□□□ 0.4
SDCBPO00560 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
SDCBPO00560 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.53■□□□□ 0.4
SDCBPO00560 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDCBPO00560 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC17.52■□□□□ 0.4
SDCBPO00560 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC17.52■□□□□ 0.4
SDCBPO00560 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SDCBPO00560 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.52■□□□□ 0.4
SDCBPO00560 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC17.52■□□□□ 0.4
SDCBPO00560 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
SDCBPO00560 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SDCBPO00560 EBPL-204ENST00000378272 766 ntTSL 3 BASIC17.52■□□□□ 0.4
SDCBPO00560 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC17.52■□□□□ 0.4
SDCBPO00560 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
SDCBPO00560 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC17.52■□□□□ 0.4
SDCBPO00560 AL031432.3-201ENST00000607698 485 ntBASIC17.52■□□□□ 0.4
SDCBPO00560 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
SDCBPO00560 AC027702.1-201ENST00000563810 1770 ntBASIC17.52■□□□□ 0.4
SDCBPO00560 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SDCBPO00560 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SDCBPO00560 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC17.52■□□□□ 0.39
SDCBPO00560 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.39
SDCBPO00560 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SDCBPO00560 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
SDCBPO00560 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
SDCBPO00560 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC17.52■□□□□ 0.39
SDCBPO00560 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
SDCBPO00560 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
SDCBPO00560 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDCBPO00560 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDCBPO00560 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SDCBPO00560 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDCBPO00560 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
SDCBPO00560 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDCBPO00560 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC17.51■□□□□ 0.39
SDCBPO00560 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.51■□□□□ 0.39
SDCBPO00560 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
SDCBPO00560 MIR572-201ENST00000384983 95 ntBASIC17.51■□□□□ 0.39
SDCBPO00560 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDCBPO00560 AC009237.3-201ENST00000393279 1427 ntBASIC17.51■□□□□ 0.39
SDCBPO00560 MFF-208ENST00000409616 1247 ntTSL 5 BASIC17.51■□□□□ 0.39
SDCBPO00560 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC17.51■□□□□ 0.39
SDCBPO00560 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC17.51■□□□□ 0.39
SDCBPO00560 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
SDCBPO00560 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC17.51■□□□□ 0.39
SDCBPO00560 AC121338.2-201ENST00000622535 1744 ntBASIC17.51■□□□□ 0.39
SDCBPO00560 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SDCBPO00560 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SDCBPO00560 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDCBPO00560 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDCBPO00560 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SDCBPO00560 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDCBPO00560 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms