Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CHKB-CPT1BH3BT56 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC11.55□□□□□ -0.56
CHKB-CPT1BH3BT56 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC11.55□□□□□ -0.56
CHKB-CPT1BH3BT56 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC11.55□□□□□ -0.56
CHKB-CPT1BH3BT56 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC11.55□□□□□ -0.56
CHKB-CPT1BH3BT56 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CHKB-CPT1BH3BT56 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC11.55□□□□□ -0.56
CHKB-CPT1BH3BT56 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC11.55□□□□□ -0.56
CHKB-CPT1BH3BT56 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
CHKB-CPT1BH3BT56 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC11.55□□□□□ -0.56
CHKB-CPT1BH3BT56 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CHKB-CPT1BH3BT56 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CHKB-CPT1BH3BT56 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
CHKB-CPT1BH3BT56 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
CHKB-CPT1BH3BT56 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
CHKB-CPT1BH3BT56 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC11.55□□□□□ -0.56
CHKB-CPT1BH3BT56 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CHKB-CPT1BH3BT56 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC11.55□□□□□ -0.56
CHKB-CPT1BH3BT56 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
CHKB-CPT1BH3BT56 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
CHKB-CPT1BH3BT56 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CHKB-CPT1BH3BT56 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CHKB-CPT1BH3BT56 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.56
CHKB-CPT1BH3BT56 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC11.54□□□□□ -0.56
CHKB-CPT1BH3BT56 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
CHKB-CPT1BH3BT56 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CHKB-CPT1BH3BT56 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CHKB-CPT1BH3BT56 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC11.54□□□□□ -0.56
CHKB-CPT1BH3BT56 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
CHKB-CPT1BH3BT56 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CHKB-CPT1BH3BT56 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC11.54□□□□□ -0.56
CHKB-CPT1BH3BT56 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CHKB-CPT1BH3BT56 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC11.54□□□□□ -0.56
CHKB-CPT1BH3BT56 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC11.54□□□□□ -0.56
CHKB-CPT1BH3BT56 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CHKB-CPT1BH3BT56 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CHKB-CPT1BH3BT56 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC11.54□□□□□ -0.56
CHKB-CPT1BH3BT56 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
CHKB-CPT1BH3BT56 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CHKB-CPT1BH3BT56 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC11.54□□□□□ -0.56
CHKB-CPT1BH3BT56 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
CHKB-CPT1BH3BT56 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
CHKB-CPT1BH3BT56 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CHKB-CPT1BH3BT56 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CHKB-CPT1BH3BT56 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 CALM3-209ENST00000597743 577 ntTSL 4 BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 AC005332.8-201ENST00000622750 2735 ntBASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
CHKB-CPT1BH3BT56 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.56
CHKB-CPT1BH3BT56 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC11.52□□□□□ -0.56
CHKB-CPT1BH3BT56 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
CHKB-CPT1BH3BT56 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
CHKB-CPT1BH3BT56 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
CHKB-CPT1BH3BT56 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
CHKB-CPT1BH3BT56 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
CHKB-CPT1BH3BT56 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
CHKB-CPT1BH3BT56 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
CHKB-CPT1BH3BT56 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC11.52□□□□□ -0.57
CHKB-CPT1BH3BT56 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
CHKB-CPT1BH3BT56 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
CHKB-CPT1BH3BT56 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC11.52□□□□□ -0.57
CHKB-CPT1BH3BT56 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
CHKB-CPT1BH3BT56 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC11.52□□□□□ -0.57
CHKB-CPT1BH3BT56 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
CHKB-CPT1BH3BT56 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
CHKB-CPT1BH3BT56 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC11.52□□□□□ -0.57
CHKB-CPT1BH3BT56 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CHKB-CPT1BH3BT56 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
CHKB-CPT1BH3BT56 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC11.52□□□□□ -0.57
CHKB-CPT1BH3BT56 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
CHKB-CPT1BH3BT56 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CHKB-CPT1BH3BT56 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms