Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 KRT126P-201ENST00000549467 1181 ntBASIC18.8■□□□□ 0.6
COL6A6A6NMZ7 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
COL6A6A6NMZ7 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A6A6NMZ7 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A6A6NMZ7 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A6A6NMZ7 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A6A6NMZ7 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
COL6A6A6NMZ7 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
COL6A6A6NMZ7 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A6A6NMZ7 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
COL6A6A6NMZ7 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.8■□□□□ 0.6
COL6A6A6NMZ7 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.8■□□□□ 0.6
COL6A6A6NMZ7 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC18.79■□□□□ 0.6
COL6A6A6NMZ7 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
COL6A6A6NMZ7 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A6A6NMZ7 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
COL6A6A6NMZ7 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A6A6NMZ7 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A6A6NMZ7 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A6A6NMZ7 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A6A6NMZ7 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A6A6NMZ7 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A6A6NMZ7 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC18.79■□□□□ 0.6
COL6A6A6NMZ7 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A6A6NMZ7 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.79■□□□□ 0.6
COL6A6A6NMZ7 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.79■□□□□ 0.6
COL6A6A6NMZ7 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A6A6NMZ7 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.79■□□□□ 0.6
COL6A6A6NMZ7 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC18.79■□□□□ 0.6
COL6A6A6NMZ7 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A6A6NMZ7 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A6A6NMZ7 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
COL6A6A6NMZ7 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.79■□□□□ 0.6
COL6A6A6NMZ7 AC005363.2-201ENST00000618631 242 ntBASIC18.79■□□□□ 0.6
COL6A6A6NMZ7 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.79■□□□□ 0.6
COL6A6A6NMZ7 LTK-203ENST00000453182 2412 ntTSL 2 BASIC18.78■□□□□ 0.6
COL6A6A6NMZ7 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
COL6A6A6NMZ7 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL6A6A6NMZ7 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
COL6A6A6NMZ7 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL6A6A6NMZ7 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.78■□□□□ 0.6
COL6A6A6NMZ7 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC18.78■□□□□ 0.6
COL6A6A6NMZ7 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
COL6A6A6NMZ7 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
COL6A6A6NMZ7 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
COL6A6A6NMZ7 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL6A6A6NMZ7 SAPCD2P1-201ENST00000395413 1184 ntBASIC18.78■□□□□ 0.6
COL6A6A6NMZ7 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
COL6A6A6NMZ7 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.78■□□□□ 0.6
COL6A6A6NMZ7 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.78■□□□□ 0.6
COL6A6A6NMZ7 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.78■□□□□ 0.6
COL6A6A6NMZ7 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.78■□□□□ 0.6
COL6A6A6NMZ7 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL6A6A6NMZ7 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL6A6A6NMZ7 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL6A6A6NMZ7 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.78■□□□□ 0.6
COL6A6A6NMZ7 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL6A6A6NMZ7 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
COL6A6A6NMZ7 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.78■□□□□ 0.6
COL6A6A6NMZ7 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC18.78■□□□□ 0.6
COL6A6A6NMZ7 TERF1P1-201ENST00000311003 1181 ntBASIC18.77■□□□□ 0.6
COL6A6A6NMZ7 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
COL6A6A6NMZ7 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
COL6A6A6NMZ7 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.77■□□□□ 0.6
COL6A6A6NMZ7 AC245052.3-201ENST00000450182 901 ntBASIC18.77■□□□□ 0.6
COL6A6A6NMZ7 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A6A6NMZ7 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.77■□□□□ 0.6
COL6A6A6NMZ7 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A6A6NMZ7 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A6A6NMZ7 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A6A6NMZ7 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A6A6NMZ7 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A6A6NMZ7 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC18.77■□□□□ 0.6
COL6A6A6NMZ7 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A6A6NMZ7 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.77■□□□□ 0.6
COL6A6A6NMZ7 TOLLIP-AS1-201ENST00000530897 939 ntBASIC18.77■□□□□ 0.6
COL6A6A6NMZ7 AC105020.6-201ENST00000621523 1217 ntBASIC18.77■□□□□ 0.6
COL6A6A6NMZ7 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC18.77■□□□□ 0.6
COL6A6A6NMZ7 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
COL6A6A6NMZ7 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A6A6NMZ7 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.76■□□□□ 0.59
COL6A6A6NMZ7 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A6A6NMZ7 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.76■□□□□ 0.59
COL6A6A6NMZ7 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC18.76■□□□□ 0.59
COL6A6A6NMZ7 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.76■□□□□ 0.59
COL6A6A6NMZ7 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A6A6NMZ7 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC18.76■□□□□ 0.59
COL6A6A6NMZ7 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC18.76■□□□□ 0.59
COL6A6A6NMZ7 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
COL6A6A6NMZ7 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC18.76■□□□□ 0.59
COL6A6A6NMZ7 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A6A6NMZ7 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A6A6NMZ7 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.76■□□□□ 0.59
COL6A6A6NMZ7 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A6A6NMZ7 AC007322.3-201ENST00000426526 701 ntBASIC18.76■□□□□ 0.59
COL6A6A6NMZ7 AL353807.1-201ENST00000427475 662 ntBASIC18.76■□□□□ 0.59
COL6A6A6NMZ7 AL355355.2-201ENST00000442321 338 ntBASIC18.76■□□□□ 0.59
COL6A6A6NMZ7 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
COL6A6A6NMZ7 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A6A6NMZ7 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms