Protein–RNA interactions for Protein: A0PJX4

SHISA3, Protein shisa-3 homolog, humanhuman

Predictions only

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA3A0PJX4 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHISA3A0PJX4 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.06■□□□□ 0.48
SHISA3A0PJX4 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SHISA3A0PJX4 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHISA3A0PJX4 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHISA3A0PJX4 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHISA3A0PJX4 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SHISA3A0PJX4 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SHISA3A0PJX4 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC18.05■□□□□ 0.48
SHISA3A0PJX4 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
SHISA3A0PJX4 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
SHISA3A0PJX4 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC18.05■□□□□ 0.48
SHISA3A0PJX4 RARRES2P1-201ENST00000474487 481 ntBASIC18.05■□□□□ 0.48
SHISA3A0PJX4 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SHISA3A0PJX4 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC18.05■□□□□ 0.48
SHISA3A0PJX4 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHISA3A0PJX4 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHISA3A0PJX4 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHISA3A0PJX4 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHISA3A0PJX4 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHISA3A0PJX4 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHISA3A0PJX4 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
SHISA3A0PJX4 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SHISA3A0PJX4 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHISA3A0PJX4 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
SHISA3A0PJX4 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
SHISA3A0PJX4 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHISA3A0PJX4 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.04■□□□□ 0.48
SHISA3A0PJX4 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SHISA3A0PJX4 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SHISA3A0PJX4 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHISA3A0PJX4 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHISA3A0PJX4 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC18.04■□□□□ 0.48
SHISA3A0PJX4 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SHISA3A0PJX4 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC18.04■□□□□ 0.48
SHISA3A0PJX4 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SHISA3A0PJX4 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHISA3A0PJX4 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SHISA3A0PJX4 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.03■□□□□ 0.48
SHISA3A0PJX4 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.03■□□□□ 0.48
SHISA3A0PJX4 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHISA3A0PJX4 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SHISA3A0PJX4 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHISA3A0PJX4 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHISA3A0PJX4 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHISA3A0PJX4 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
SHISA3A0PJX4 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC18.03■□□□□ 0.48
SHISA3A0PJX4 CREM-229ENST00000474362 1030 ntTSL 2 BASIC18.03■□□□□ 0.48
SHISA3A0PJX4 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC18.03■□□□□ 0.48
SHISA3A0PJX4 AP005435.1-201ENST00000529293 1178 ntBASIC18.03■□□□□ 0.48
SHISA3A0PJX4 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SHISA3A0PJX4 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC18.03■□□□□ 0.48
SHISA3A0PJX4 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
SHISA3A0PJX4 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.03■□□□□ 0.48
SHISA3A0PJX4 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.03■□□□□ 0.48
SHISA3A0PJX4 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHISA3A0PJX4 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHISA3A0PJX4 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHISA3A0PJX4 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHISA3A0PJX4 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.02■□□□□ 0.48
SHISA3A0PJX4 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.02■□□□□ 0.48
SHISA3A0PJX4 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SHISA3A0PJX4 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHISA3A0PJX4 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHISA3A0PJX4 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
SHISA3A0PJX4 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHISA3A0PJX4 AP000974.1-201ENST00000623909 2387 ntBASIC18.02■□□□□ 0.48
SHISA3A0PJX4 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
SHISA3A0PJX4 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.02■□□□□ 0.48
SHISA3A0PJX4 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHISA3A0PJX4 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHISA3A0PJX4 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHISA3A0PJX4 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
SHISA3A0PJX4 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC18.02■□□□□ 0.48
SHISA3A0PJX4 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SHISA3A0PJX4 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SHISA3A0PJX4 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
SHISA3A0PJX4 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
SHISA3A0PJX4 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
SHISA3A0PJX4 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SHISA3A0PJX4 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
SHISA3A0PJX4 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHISA3A0PJX4 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.01■□□□□ 0.47
SHISA3A0PJX4 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
SHISA3A0PJX4 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC18.01■□□□□ 0.47
SHISA3A0PJX4 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC18.01■□□□□ 0.47
SHISA3A0PJX4 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC18.01■□□□□ 0.47
SHISA3A0PJX4 SMUG1P1-201ENST00000590640 811 ntBASIC18.01■□□□□ 0.47
SHISA3A0PJX4 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
SHISA3A0PJX4 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHISA3A0PJX4 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.01■□□□□ 0.47
SHISA3A0PJX4 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHISA3A0PJX4 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
SHISA3A0PJX4 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SHISA3A0PJX4 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHISA3A0PJX4 AC011484.1-201ENST00000377652 1995 ntBASIC18■□□□□ 0.47
SHISA3A0PJX4 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
SHISA3A0PJX4 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC18■□□□□ 0.47
SHISA3A0PJX4 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHISA3A0PJX4 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms