Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
TCRBV7S3A2A0A539 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
TCRBV7S3A2A0A539 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TCRBV7S3A2A0A539 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.04■□□□□ 0.96
TCRBV7S3A2A0A539 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TCRBV7S3A2A0A539 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
TCRBV7S3A2A0A539 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TCRBV7S3A2A0A539 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.04■□□□□ 0.96
TCRBV7S3A2A0A539 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.04■□□□□ 0.96
TCRBV7S3A2A0A539 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.04■□□□□ 0.96
TCRBV7S3A2A0A539 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TCRBV7S3A2A0A539 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TCRBV7S3A2A0A539 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.04■□□□□ 0.96
TCRBV7S3A2A0A539 AC112907.3-201ENST00000577781 2400 ntBASIC21.04■□□□□ 0.96
TCRBV7S3A2A0A539 AL121603.2-201ENST00000557373 2117 ntBASIC21.04■□□□□ 0.96
TCRBV7S3A2A0A539 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TCRBV7S3A2A0A539 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TCRBV7S3A2A0A539 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.03■□□□□ 0.96
TCRBV7S3A2A0A539 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TCRBV7S3A2A0A539 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TCRBV7S3A2A0A539 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TCRBV7S3A2A0A539 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
TCRBV7S3A2A0A539 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TCRBV7S3A2A0A539 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TCRBV7S3A2A0A539 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC21.03■□□□□ 0.96
TCRBV7S3A2A0A539 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.03■□□□□ 0.96
TCRBV7S3A2A0A539 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
TCRBV7S3A2A0A539 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TCRBV7S3A2A0A539 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
TCRBV7S3A2A0A539 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TCRBV7S3A2A0A539 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.03■□□□□ 0.96
TCRBV7S3A2A0A539 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC21.03■□□□□ 0.96
TCRBV7S3A2A0A539 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TCRBV7S3A2A0A539 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
TCRBV7S3A2A0A539 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TCRBV7S3A2A0A539 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
TCRBV7S3A2A0A539 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.03■□□□□ 0.96
TCRBV7S3A2A0A539 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TCRBV7S3A2A0A539 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TCRBV7S3A2A0A539 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.02■□□□□ 0.96
TCRBV7S3A2A0A539 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
TCRBV7S3A2A0A539 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
TCRBV7S3A2A0A539 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TCRBV7S3A2A0A539 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TCRBV7S3A2A0A539 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TCRBV7S3A2A0A539 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
TCRBV7S3A2A0A539 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.02■□□□□ 0.96
TCRBV7S3A2A0A539 AC008175.2-201ENST00000612840 297 ntBASIC21.02■□□□□ 0.96
TCRBV7S3A2A0A539 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TCRBV7S3A2A0A539 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
TCRBV7S3A2A0A539 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.02■□□□□ 0.96
TCRBV7S3A2A0A539 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC21.02■□□□□ 0.96
TCRBV7S3A2A0A539 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TCRBV7S3A2A0A539 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
TCRBV7S3A2A0A539 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
TCRBV7S3A2A0A539 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
TCRBV7S3A2A0A539 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC21.02■□□□□ 0.95
TCRBV7S3A2A0A539 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
TCRBV7S3A2A0A539 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC21.01■□□□□ 0.95
TCRBV7S3A2A0A539 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TCRBV7S3A2A0A539 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.01■□□□□ 0.95
TCRBV7S3A2A0A539 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
TCRBV7S3A2A0A539 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.01■□□□□ 0.95
TCRBV7S3A2A0A539 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.01■□□□□ 0.95
TCRBV7S3A2A0A539 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TCRBV7S3A2A0A539 POU5F1P4-201ENST00000413175 1085 ntBASIC21.01■□□□□ 0.95
TCRBV7S3A2A0A539 AC027612.3-201ENST00000413684 1047 ntBASIC21.01■□□□□ 0.95
TCRBV7S3A2A0A539 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TCRBV7S3A2A0A539 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
TCRBV7S3A2A0A539 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TCRBV7S3A2A0A539 AC138907.5-202ENST00000569484 235 ntBASIC21.01■□□□□ 0.95
TCRBV7S3A2A0A539 AFG3L1P-217ENST00000557444 2447 ntBASIC21.01■□□□□ 0.95
TCRBV7S3A2A0A539 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
TCRBV7S3A2A0A539 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TCRBV7S3A2A0A539 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TCRBV7S3A2A0A539 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.01■□□□□ 0.95
TCRBV7S3A2A0A539 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TCRBV7S3A2A0A539 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21.01■□□□□ 0.95
TCRBV7S3A2A0A539 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TCRBV7S3A2A0A539 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
TCRBV7S3A2A0A539 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC21.01■□□□□ 0.95
TCRBV7S3A2A0A539 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC21.01■□□□□ 0.95
TCRBV7S3A2A0A539 AL162377.1-201ENST00000618844 1793 ntBASIC21■□□□□ 0.95
TCRBV7S3A2A0A539 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21■□□□□ 0.95
TCRBV7S3A2A0A539 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TCRBV7S3A2A0A539 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
TCRBV7S3A2A0A539 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TCRBV7S3A2A0A539 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TCRBV7S3A2A0A539 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
TCRBV7S3A2A0A539 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC21■□□□□ 0.95
TCRBV7S3A2A0A539 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
TCRBV7S3A2A0A539 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
TCRBV7S3A2A0A539 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC21■□□□□ 0.95
TCRBV7S3A2A0A539 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TCRBV7S3A2A0A539 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TCRBV7S3A2A0A539 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21■□□□□ 0.95
TCRBV7S3A2A0A539 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TCRBV7S3A2A0A539 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC21■□□□□ 0.95
TCRBV7S3A2A0A539 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TCRBV7S3A2A0A539 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms