Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV41A0A0B4J266 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV41A0A0B4J266 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV41A0A0B4J266 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC16.29■□□□□ 0.2
TRAV41A0A0B4J266 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
TRAV41A0A0B4J266 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV41A0A0B4J266 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV41A0A0B4J266 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC16.29■□□□□ 0.2
TRAV41A0A0B4J266 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC16.29■□□□□ 0.2
TRAV41A0A0B4J266 PTPA-214ENST00000423100 988 ntTSL 2 BASIC16.29■□□□□ 0.2
TRAV41A0A0B4J266 AC007322.4-201ENST00000509611 723 ntBASIC16.29■□□□□ 0.2
TRAV41A0A0B4J266 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC16.29■□□□□ 0.2
TRAV41A0A0B4J266 AL591742.1-201ENST00000604433 565 ntBASIC16.29■□□□□ 0.2
TRAV41A0A0B4J266 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV41A0A0B4J266 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
TRAV41A0A0B4J266 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV41A0A0B4J266 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 AF106564.1-201ENST00000607058 2553 ntBASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 AC091799.1-201ENST00000422823 811 ntBASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 UQCRFS1P1-201ENST00000435169 820 ntBASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 CDCA4P2-201ENST00000441182 718 ntBASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 AC026185.1-201ENST00000445748 174 ntBASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 CDV3P1-201ENST00000471403 739 ntBASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV41A0A0B4J266 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV41A0A0B4J266 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV41A0A0B4J266 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
TRAV41A0A0B4J266 AC007375.3-201ENST00000600936 2314 ntBASIC16.27■□□□□ 0.2
TRAV41A0A0B4J266 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV41A0A0B4J266 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC16.27■□□□□ 0.2
TRAV41A0A0B4J266 CNN2P6-201ENST00000439038 900 ntBASIC16.27■□□□□ 0.2
TRAV41A0A0B4J266 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
TRAV41A0A0B4J266 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC16.27■□□□□ 0.2
TRAV41A0A0B4J266 MAZ-216ENST00000616501 991 ntTSL 5 BASIC16.27■□□□□ 0.2
TRAV41A0A0B4J266 PARP1-210ENST00000629232 477 ntTSL 5 BASIC16.27■□□□□ 0.2
TRAV41A0A0B4J266 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC16.27■□□□□ 0.2
TRAV41A0A0B4J266 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV41A0A0B4J266 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV41A0A0B4J266 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV41A0A0B4J266 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC16.27■□□□□ 0.19
TRAV41A0A0B4J266 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRAV41A0A0B4J266 EXOC3-AS1-202ENST00000623673 1663 ntBASIC16.27■□□□□ 0.19
TRAV41A0A0B4J266 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 BET1L-204ENST00000410108 637 ntTSL 3 BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 PBX1-209ENST00000485769 834 ntTSL 2 BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 AC116050.2-201ENST00000612102 1779 ntBASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC16.26■□□□□ 0.19
TRAV41A0A0B4J266 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV41A0A0B4J266 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV41A0A0B4J266 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV41A0A0B4J266 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
TRAV41A0A0B4J266 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV41A0A0B4J266 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV41A0A0B4J266 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC16.25■□□□□ 0.19
TRAV41A0A0B4J266 AC007322.3-201ENST00000426526 701 ntBASIC16.25■□□□□ 0.19
TRAV41A0A0B4J266 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
TRAV41A0A0B4J266 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms