Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC21.66■■□□□ 1.06
PCDHA3Q9Y5H8 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHA3Q9Y5H8 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.66■■□□□ 1.06
PCDHA3Q9Y5H8 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHA3Q9Y5H8 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHA3Q9Y5H8 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.66■■□□□ 1.06
PCDHA3Q9Y5H8 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHA3Q9Y5H8 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.65■■□□□ 1.06
PCDHA3Q9Y5H8 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHA3Q9Y5H8 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.65■■□□□ 1.06
PCDHA3Q9Y5H8 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHA3Q9Y5H8 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHA3Q9Y5H8 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC21.65■■□□□ 1.06
PCDHA3Q9Y5H8 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHA3Q9Y5H8 POU5F1P4-201ENST00000413175 1085 ntBASIC21.65■■□□□ 1.06
PCDHA3Q9Y5H8 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHA3Q9Y5H8 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHA3Q9Y5H8 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHA3Q9Y5H8 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHA3Q9Y5H8 AL139246.5-201ENST00000606645 996 ntBASIC21.65■■□□□ 1.06
PCDHA3Q9Y5H8 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHA3Q9Y5H8 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHA3Q9Y5H8 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
PCDHA3Q9Y5H8 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
PCDHA3Q9Y5H8 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.06
PCDHA3Q9Y5H8 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PCDHA3Q9Y5H8 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC21.64■■□□□ 1.06
PCDHA3Q9Y5H8 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
PCDHA3Q9Y5H8 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PCDHA3Q9Y5H8 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
PCDHA3Q9Y5H8 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHA3Q9Y5H8 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
PCDHA3Q9Y5H8 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHA3Q9Y5H8 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC21.64■■□□□ 1.05
PCDHA3Q9Y5H8 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.64■■□□□ 1.05
PCDHA3Q9Y5H8 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.64■■□□□ 1.05
PCDHA3Q9Y5H8 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
PCDHA3Q9Y5H8 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHA3Q9Y5H8 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHA3Q9Y5H8 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHA3Q9Y5H8 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.64■■□□□ 1.05
PCDHA3Q9Y5H8 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHA3Q9Y5H8 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHA3Q9Y5H8 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC21.63■■□□□ 1.05
PCDHA3Q9Y5H8 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHA3Q9Y5H8 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.63■■□□□ 1.05
PCDHA3Q9Y5H8 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
PCDHA3Q9Y5H8 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
PCDHA3Q9Y5H8 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHA3Q9Y5H8 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHA3Q9Y5H8 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHA3Q9Y5H8 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHA3Q9Y5H8 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHA3Q9Y5H8 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHA3Q9Y5H8 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHA3Q9Y5H8 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHA3Q9Y5H8 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.63■■□□□ 1.05
PCDHA3Q9Y5H8 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC21.63■■□□□ 1.05
PCDHA3Q9Y5H8 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
PCDHA3Q9Y5H8 AC008175.2-201ENST00000612840 297 ntBASIC21.63■■□□□ 1.05
PCDHA3Q9Y5H8 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHA3Q9Y5H8 DET1-207ENST00000564406 2315 ntTSL 2 BASIC21.63■■□□□ 1.05
PCDHA3Q9Y5H8 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHA3Q9Y5H8 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHA3Q9Y5H8 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC21.63■■□□□ 1.05
PCDHA3Q9Y5H8 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.63■■□□□ 1.05
PCDHA3Q9Y5H8 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
PCDHA3Q9Y5H8 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHA3Q9Y5H8 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHA3Q9Y5H8 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
PCDHA3Q9Y5H8 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC21.62■■□□□ 1.05
PCDHA3Q9Y5H8 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHA3Q9Y5H8 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
PCDHA3Q9Y5H8 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHA3Q9Y5H8 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHA3Q9Y5H8 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.62■■□□□ 1.05
PCDHA3Q9Y5H8 AC079140.4-201ENST00000507448 529 ntBASIC21.62■■□□□ 1.05
PCDHA3Q9Y5H8 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.62■■□□□ 1.05
PCDHA3Q9Y5H8 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.62■■□□□ 1.05
PCDHA3Q9Y5H8 MIR6084-201ENST00000622012 110 ntBASIC21.62■■□□□ 1.05
PCDHA3Q9Y5H8 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC21.62■■□□□ 1.05
PCDHA3Q9Y5H8 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHA3Q9Y5H8 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHA3Q9Y5H8 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHA3Q9Y5H8 KRT87P-202ENST00000534226 1464 ntBASIC21.62■■□□□ 1.05
PCDHA3Q9Y5H8 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHA3Q9Y5H8 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.62■■□□□ 1.05
PCDHA3Q9Y5H8 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHA3Q9Y5H8 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHA3Q9Y5H8 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHA3Q9Y5H8 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC21.61■■□□□ 1.05
PCDHA3Q9Y5H8 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHA3Q9Y5H8 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHA3Q9Y5H8 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC21.61■■□□□ 1.05
PCDHA3Q9Y5H8 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHA3Q9Y5H8 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHA3Q9Y5H8 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHA3Q9Y5H8 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHA3Q9Y5H8 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHA3Q9Y5H8 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms