Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CTDP1Q9Y5B0 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CTDP1Q9Y5B0 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC23.98■■□□□ 1.43
CTDP1Q9Y5B0 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CTDP1Q9Y5B0 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC23.97■■□□□ 1.43
CTDP1Q9Y5B0 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CTDP1Q9Y5B0 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CTDP1Q9Y5B0 PTPA-214ENST00000423100 988 ntTSL 2 BASIC23.97■■□□□ 1.43
CTDP1Q9Y5B0 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CTDP1Q9Y5B0 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CTDP1Q9Y5B0 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC23.97■■□□□ 1.43
CTDP1Q9Y5B0 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC23.97■■□□□ 1.43
CTDP1Q9Y5B0 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC23.97■■□□□ 1.43
CTDP1Q9Y5B0 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC23.97■■□□□ 1.43
CTDP1Q9Y5B0 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC23.97■■□□□ 1.43
CTDP1Q9Y5B0 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
CTDP1Q9Y5B0 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
CTDP1Q9Y5B0 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CTDP1Q9Y5B0 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC23.96■■□□□ 1.43
CTDP1Q9Y5B0 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CTDP1Q9Y5B0 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CTDP1Q9Y5B0 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CTDP1Q9Y5B0 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CTDP1Q9Y5B0 MCRIP2P1-201ENST00000394346 511 ntBASIC23.96■■□□□ 1.43
CTDP1Q9Y5B0 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC23.96■■□□□ 1.43
CTDP1Q9Y5B0 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC23.96■■□□□ 1.43
CTDP1Q9Y5B0 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CTDP1Q9Y5B0 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC23.96■■□□□ 1.43
CTDP1Q9Y5B0 CYP2T3P-201ENST00000601990 817 ntBASIC23.96■■□□□ 1.43
CTDP1Q9Y5B0 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CTDP1Q9Y5B0 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
CTDP1Q9Y5B0 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
CTDP1Q9Y5B0 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CTDP1Q9Y5B0 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CTDP1Q9Y5B0 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.43
CTDP1Q9Y5B0 KRT17P1-201ENST00000399211 1546 ntBASIC23.95■■□□□ 1.43
CTDP1Q9Y5B0 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.42
CTDP1Q9Y5B0 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CTDP1Q9Y5B0 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC23.95■■□□□ 1.42
CTDP1Q9Y5B0 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
CTDP1Q9Y5B0 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC23.95■■□□□ 1.42
CTDP1Q9Y5B0 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
CTDP1Q9Y5B0 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
CTDP1Q9Y5B0 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC23.95■■□□□ 1.42
CTDP1Q9Y5B0 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC23.95■■□□□ 1.42
CTDP1Q9Y5B0 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC23.95■■□□□ 1.42
CTDP1Q9Y5B0 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC23.95■■□□□ 1.42
CTDP1Q9Y5B0 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC23.95■■□□□ 1.42
CTDP1Q9Y5B0 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC23.95■■□□□ 1.42
CTDP1Q9Y5B0 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC23.95■■□□□ 1.42
CTDP1Q9Y5B0 AL589743.5-201ENST00000616611 1050 ntBASIC23.95■■□□□ 1.42
CTDP1Q9Y5B0 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC23.95■■□□□ 1.42
CTDP1Q9Y5B0 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CTDP1Q9Y5B0 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CTDP1Q9Y5B0 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.42
CTDP1Q9Y5B0 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC23.95■■□□□ 1.42
CTDP1Q9Y5B0 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CTDP1Q9Y5B0 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC23.94■■□□□ 1.42
CTDP1Q9Y5B0 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CTDP1Q9Y5B0 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CTDP1Q9Y5B0 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CTDP1Q9Y5B0 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC23.94■■□□□ 1.42
CTDP1Q9Y5B0 VMO1-204ENST00000441199 741 ntTSL 2 BASIC23.94■■□□□ 1.42
CTDP1Q9Y5B0 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC23.94■■□□□ 1.42
CTDP1Q9Y5B0 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC23.94■■□□□ 1.42
CTDP1Q9Y5B0 ITM2C-210ENST00000620962 501 ntBASIC23.94■■□□□ 1.42
CTDP1Q9Y5B0 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CTDP1Q9Y5B0 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC23.93■■□□□ 1.42
CTDP1Q9Y5B0 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
CTDP1Q9Y5B0 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CTDP1Q9Y5B0 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CTDP1Q9Y5B0 IRX5-204ENST00000560154 879 ntTSL 5 BASIC23.93■■□□□ 1.42
CTDP1Q9Y5B0 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC23.93■■□□□ 1.42
CTDP1Q9Y5B0 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CTDP1Q9Y5B0 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
CTDP1Q9Y5B0 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC23.93■■□□□ 1.42
CTDP1Q9Y5B0 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CTDP1Q9Y5B0 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC23.92■■□□□ 1.42
CTDP1Q9Y5B0 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC23.92■■□□□ 1.42
CTDP1Q9Y5B0 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC23.92■■□□□ 1.42
CTDP1Q9Y5B0 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CTDP1Q9Y5B0 SAPCD2P1-201ENST00000395413 1184 ntBASIC23.92■■□□□ 1.42
CTDP1Q9Y5B0 ESRRAP1-201ENST00000400596 1257 ntBASIC23.92■■□□□ 1.42
CTDP1Q9Y5B0 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC23.92■■□□□ 1.42
CTDP1Q9Y5B0 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CTDP1Q9Y5B0 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CTDP1Q9Y5B0 INO80E-214ENST00000620599 515 ntTSL 2 BASIC23.92■■□□□ 1.42
CTDP1Q9Y5B0 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC23.92■■□□□ 1.42
CTDP1Q9Y5B0 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
CTDP1Q9Y5B0 ME2-206ENST00000638410 2289 ntTSL 5 BASIC23.92■■□□□ 1.42
CTDP1Q9Y5B0 ME2-210ENST00000639255 2262 ntTSL 5 BASIC23.92■■□□□ 1.42
CTDP1Q9Y5B0 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC23.92■■□□□ 1.42
CTDP1Q9Y5B0 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CTDP1Q9Y5B0 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC23.91■■□□□ 1.42
CTDP1Q9Y5B0 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CTDP1Q9Y5B0 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CTDP1Q9Y5B0 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CTDP1Q9Y5B0 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CTDP1Q9Y5B0 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CTDP1Q9Y5B0 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms