Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4BQ9Y4P1 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4BQ9Y4P1 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4BQ9Y4P1 AC121338.2-201ENST00000622535 1744 ntBASIC19.62■□□□□ 0.73
ATG4BQ9Y4P1 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4BQ9Y4P1 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
ATG4BQ9Y4P1 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.61■□□□□ 0.73
ATG4BQ9Y4P1 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4BQ9Y4P1 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4BQ9Y4P1 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.61■□□□□ 0.73
ATG4BQ9Y4P1 AC016769.1-201ENST00000409132 1010 ntBASIC19.61■□□□□ 0.73
ATG4BQ9Y4P1 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4BQ9Y4P1 AC006015.1-201ENST00000429970 570 ntBASIC19.61■□□□□ 0.73
ATG4BQ9Y4P1 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.61■□□□□ 0.73
ATG4BQ9Y4P1 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.61■□□□□ 0.73
ATG4BQ9Y4P1 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.61■□□□□ 0.73
ATG4BQ9Y4P1 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4BQ9Y4P1 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4BQ9Y4P1 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4BQ9Y4P1 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4BQ9Y4P1 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4BQ9Y4P1 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4BQ9Y4P1 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4BQ9Y4P1 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4BQ9Y4P1 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4BQ9Y4P1 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.6■□□□□ 0.73
ATG4BQ9Y4P1 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4BQ9Y4P1 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
ATG4BQ9Y4P1 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
ATG4BQ9Y4P1 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
ATG4BQ9Y4P1 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4BQ9Y4P1 KRT18P11-201ENST00000435214 1283 ntBASIC19.6■□□□□ 0.73
ATG4BQ9Y4P1 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.6■□□□□ 0.73
ATG4BQ9Y4P1 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.6■□□□□ 0.73
ATG4BQ9Y4P1 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4BQ9Y4P1 AL137784.2-201ENST00000607332 1000 ntBASIC19.6■□□□□ 0.73
ATG4BQ9Y4P1 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.6■□□□□ 0.73
ATG4BQ9Y4P1 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.6■□□□□ 0.73
ATG4BQ9Y4P1 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4BQ9Y4P1 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4BQ9Y4P1 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4BQ9Y4P1 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4BQ9Y4P1 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4BQ9Y4P1 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4BQ9Y4P1 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4BQ9Y4P1 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4BQ9Y4P1 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.6■□□□□ 0.73
ATG4BQ9Y4P1 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.6■□□□□ 0.73
ATG4BQ9Y4P1 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4BQ9Y4P1 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
ATG4BQ9Y4P1 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.59■□□□□ 0.73
ATG4BQ9Y4P1 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
ATG4BQ9Y4P1 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.59■□□□□ 0.73
ATG4BQ9Y4P1 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATG4BQ9Y4P1 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATG4BQ9Y4P1 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
ATG4BQ9Y4P1 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
ATG4BQ9Y4P1 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
ATG4BQ9Y4P1 AC243732.1-201ENST00000612648 864 ntBASIC19.59■□□□□ 0.73
ATG4BQ9Y4P1 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.59■□□□□ 0.73
ATG4BQ9Y4P1 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
ATG4BQ9Y4P1 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATG4BQ9Y4P1 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.59■□□□□ 0.73
ATG4BQ9Y4P1 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATG4BQ9Y4P1 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
ATG4BQ9Y4P1 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.58■□□□□ 0.73
ATG4BQ9Y4P1 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.58■□□□□ 0.72
ATG4BQ9Y4P1 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
ATG4BQ9Y4P1 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.58■□□□□ 0.72
ATG4BQ9Y4P1 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.58■□□□□ 0.72
ATG4BQ9Y4P1 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.58■□□□□ 0.72
ATG4BQ9Y4P1 AC010536.3-201ENST00000620306 533 ntBASIC19.58■□□□□ 0.72
ATG4BQ9Y4P1 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
ATG4BQ9Y4P1 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ATG4BQ9Y4P1 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.58■□□□□ 0.72
ATG4BQ9Y4P1 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
ATG4BQ9Y4P1 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
ATG4BQ9Y4P1 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
ATG4BQ9Y4P1 AC011484.1-201ENST00000377652 1995 ntBASIC19.57■□□□□ 0.72
ATG4BQ9Y4P1 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
ATG4BQ9Y4P1 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ATG4BQ9Y4P1 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
ATG4BQ9Y4P1 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
ATG4BQ9Y4P1 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.57■□□□□ 0.72
ATG4BQ9Y4P1 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
ATG4BQ9Y4P1 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
ATG4BQ9Y4P1 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
ATG4BQ9Y4P1 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
ATG4BQ9Y4P1 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
ATG4BQ9Y4P1 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.57■□□□□ 0.72
ATG4BQ9Y4P1 MFSD11-216ENST00000590393 1141 ntBASIC19.57■□□□□ 0.72
ATG4BQ9Y4P1 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ATG4BQ9Y4P1 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ATG4BQ9Y4P1 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ATG4BQ9Y4P1 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.57■□□□□ 0.72
ATG4BQ9Y4P1 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
ATG4BQ9Y4P1 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.57■□□□□ 0.72
ATG4BQ9Y4P1 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.57■□□□□ 0.72
ATG4BQ9Y4P1 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.56■□□□□ 0.72
ATG4BQ9Y4P1 AC006128.1-201ENST00000624704 1661 ntBASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms