Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SMARCAL1Q9NZC9 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SMARCAL1Q9NZC9 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SMARCAL1Q9NZC9 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SMARCAL1Q9NZC9 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.81■■□□□ 1.08
SMARCAL1Q9NZC9 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
SMARCAL1Q9NZC9 AC011298.3-201ENST00000615796 283 ntBASIC21.81■■□□□ 1.08
SMARCAL1Q9NZC9 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
SMARCAL1Q9NZC9 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SMARCAL1Q9NZC9 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
SMARCAL1Q9NZC9 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SMARCAL1Q9NZC9 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
SMARCAL1Q9NZC9 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMARCAL1Q9NZC9 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SMARCAL1Q9NZC9 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.8■■□□□ 1.08
SMARCAL1Q9NZC9 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC21.8■■□□□ 1.08
SMARCAL1Q9NZC9 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SMARCAL1Q9NZC9 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMARCAL1Q9NZC9 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
SMARCAL1Q9NZC9 AC096631.2-201ENST00000436136 790 ntBASIC21.8■■□□□ 1.08
SMARCAL1Q9NZC9 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.8■■□□□ 1.08
SMARCAL1Q9NZC9 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC21.8■■□□□ 1.08
SMARCAL1Q9NZC9 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.8■■□□□ 1.08
SMARCAL1Q9NZC9 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC21.8■■□□□ 1.08
SMARCAL1Q9NZC9 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
SMARCAL1Q9NZC9 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.8■■□□□ 1.08
SMARCAL1Q9NZC9 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC21.8■■□□□ 1.08
SMARCAL1Q9NZC9 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SMARCAL1Q9NZC9 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMARCAL1Q9NZC9 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMARCAL1Q9NZC9 AL162377.1-201ENST00000618844 1793 ntBASIC21.79■■□□□ 1.08
SMARCAL1Q9NZC9 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCAL1Q9NZC9 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC21.79■■□□□ 1.08
SMARCAL1Q9NZC9 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.79■■□□□ 1.08
SMARCAL1Q9NZC9 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.79■■□□□ 1.08
SMARCAL1Q9NZC9 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
SMARCAL1Q9NZC9 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCAL1Q9NZC9 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.79■■□□□ 1.08
SMARCAL1Q9NZC9 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
SMARCAL1Q9NZC9 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.79■■□□□ 1.08
SMARCAL1Q9NZC9 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.79■■□□□ 1.08
SMARCAL1Q9NZC9 AL136162.1-201ENST00000607711 1078 ntBASIC21.79■■□□□ 1.08
SMARCAL1Q9NZC9 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCAL1Q9NZC9 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.79■■□□□ 1.08
SMARCAL1Q9NZC9 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCAL1Q9NZC9 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
SMARCAL1Q9NZC9 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
SMARCAL1Q9NZC9 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC21.79■■□□□ 1.08
SMARCAL1Q9NZC9 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.78■■□□□ 1.08
SMARCAL1Q9NZC9 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
SMARCAL1Q9NZC9 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMARCAL1Q9NZC9 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SMARCAL1Q9NZC9 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.78■■□□□ 1.08
SMARCAL1Q9NZC9 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.78■■□□□ 1.08
SMARCAL1Q9NZC9 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
SMARCAL1Q9NZC9 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
SMARCAL1Q9NZC9 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC21.78■■□□□ 1.08
SMARCAL1Q9NZC9 AC099778.1-201ENST00000568593 1911 ntBASIC21.78■■□□□ 1.08
SMARCAL1Q9NZC9 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMARCAL1Q9NZC9 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMARCAL1Q9NZC9 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMARCAL1Q9NZC9 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCAL1Q9NZC9 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
SMARCAL1Q9NZC9 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCAL1Q9NZC9 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCAL1Q9NZC9 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCAL1Q9NZC9 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCAL1Q9NZC9 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCAL1Q9NZC9 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCAL1Q9NZC9 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCAL1Q9NZC9 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCAL1Q9NZC9 PTMA-205ENST00000410064 814 ntTSL 2 BASIC21.77■■□□□ 1.08
SMARCAL1Q9NZC9 AC024257.2-201ENST00000549699 147 ntBASIC21.77■■□□□ 1.08
SMARCAL1Q9NZC9 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
SMARCAL1Q9NZC9 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC21.77■■□□□ 1.08
SMARCAL1Q9NZC9 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC21.77■■□□□ 1.08
SMARCAL1Q9NZC9 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.77■■□□□ 1.08
SMARCAL1Q9NZC9 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCAL1Q9NZC9 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCAL1Q9NZC9 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.07
SMARCAL1Q9NZC9 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
SMARCAL1Q9NZC9 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMARCAL1Q9NZC9 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC21.76■■□□□ 1.07
SMARCAL1Q9NZC9 BX005040.4-201ENST00000637145 1518 ntBASIC21.76■■□□□ 1.07
SMARCAL1Q9NZC9 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMARCAL1Q9NZC9 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMARCAL1Q9NZC9 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
SMARCAL1Q9NZC9 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SMARCAL1Q9NZC9 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SMARCAL1Q9NZC9 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.76■■□□□ 1.07
SMARCAL1Q9NZC9 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.76■■□□□ 1.07
SMARCAL1Q9NZC9 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMARCAL1Q9NZC9 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMARCAL1Q9NZC9 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
SMARCAL1Q9NZC9 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMARCAL1Q9NZC9 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMARCAL1Q9NZC9 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC21.76■■□□□ 1.07
SMARCAL1Q9NZC9 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
SMARCAL1Q9NZC9 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMARCAL1Q9NZC9 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms