Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIME1Q9H400 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LIME1Q9H400 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIME1Q9H400 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIME1Q9H400 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIME1Q9H400 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIME1Q9H400 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIME1Q9H400 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIME1Q9H400 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIME1Q9H400 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIME1Q9H400 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
LIME1Q9H400 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC18.19■□□□□ 0.5
LIME1Q9H400 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIME1Q9H400 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC18.19■□□□□ 0.5
LIME1Q9H400 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIME1Q9H400 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIME1Q9H400 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIME1Q9H400 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC18.19■□□□□ 0.5
LIME1Q9H400 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIME1Q9H400 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.19■□□□□ 0.5
LIME1Q9H400 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.19■□□□□ 0.5
LIME1Q9H400 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
LIME1Q9H400 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.19■□□□□ 0.5
LIME1Q9H400 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIME1Q9H400 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIME1Q9H400 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.18■□□□□ 0.5
LIME1Q9H400 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIME1Q9H400 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC18.18■□□□□ 0.5
LIME1Q9H400 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC18.18■□□□□ 0.5
LIME1Q9H400 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC18.18■□□□□ 0.5
LIME1Q9H400 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LIME1Q9H400 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC18.18■□□□□ 0.5
LIME1Q9H400 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIME1Q9H400 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIME1Q9H400 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIME1Q9H400 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIME1Q9H400 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
LIME1Q9H400 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LIME1Q9H400 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.18■□□□□ 0.5
LIME1Q9H400 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIME1Q9H400 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC18.18■□□□□ 0.5
LIME1Q9H400 EEF1DP3-203ENST00000566025 782 ntBASIC18.18■□□□□ 0.5
LIME1Q9H400 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIME1Q9H400 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIME1Q9H400 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
LIME1Q9H400 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIME1Q9H400 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
LIME1Q9H400 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
LIME1Q9H400 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIME1Q9H400 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIME1Q9H400 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
LIME1Q9H400 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIME1Q9H400 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LIME1Q9H400 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIME1Q9H400 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.17■□□□□ 0.5
LIME1Q9H400 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC18.17■□□□□ 0.5
LIME1Q9H400 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.17■□□□□ 0.5
LIME1Q9H400 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC18.17■□□□□ 0.5
LIME1Q9H400 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LIME1Q9H400 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.17■□□□□ 0.5
LIME1Q9H400 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
LIME1Q9H400 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
LIME1Q9H400 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC18.17■□□□□ 0.5
LIME1Q9H400 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
LIME1Q9H400 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
LIME1Q9H400 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIME1Q9H400 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIME1Q9H400 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIME1Q9H400 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LIME1Q9H400 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.16■□□□□ 0.5
LIME1Q9H400 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LIME1Q9H400 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LIME1Q9H400 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIME1Q9H400 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
LIME1Q9H400 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIME1Q9H400 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.16■□□□□ 0.5
LIME1Q9H400 AC091874.3-201ENST00000512672 1195 ntBASIC18.16■□□□□ 0.5
LIME1Q9H400 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LIME1Q9H400 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.16■□□□□ 0.5
LIME1Q9H400 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIME1Q9H400 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.16■□□□□ 0.5
LIME1Q9H400 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIME1Q9H400 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIME1Q9H400 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIME1Q9H400 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIME1Q9H400 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIME1Q9H400 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
LIME1Q9H400 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIME1Q9H400 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC18.15■□□□□ 0.5
LIME1Q9H400 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIME1Q9H400 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC18.15■□□□□ 0.5
LIME1Q9H400 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC18.15■□□□□ 0.5
LIME1Q9H400 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
LIME1Q9H400 BAALC-201ENST00000297574 801 ntTSL 3 BASIC18.15■□□□□ 0.5
LIME1Q9H400 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIME1Q9H400 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
LIME1Q9H400 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIME1Q9H400 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.15■□□□□ 0.5
LIME1Q9H400 UNC93B4-201ENST00000505679 747 ntBASIC18.15■□□□□ 0.5
LIME1Q9H400 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms