Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC069236.1-201ENST00000604339 616 ntBASIC19.92■□□□□ 0.78
CLIP3Q96DZ5 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC19.92■□□□□ 0.78
CLIP3Q96DZ5 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.92■□□□□ 0.78
CLIP3Q96DZ5 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.92■□□□□ 0.78
CLIP3Q96DZ5 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.92■□□□□ 0.78
CLIP3Q96DZ5 AC010542.4-201ENST00000563151 1910 ntBASIC19.92■□□□□ 0.78
CLIP3Q96DZ5 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.92■□□□□ 0.78
CLIP3Q96DZ5 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CLIP3Q96DZ5 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CLIP3Q96DZ5 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.91■□□□□ 0.78
CLIP3Q96DZ5 ECEL1P1-201ENST00000373592 1742 ntBASIC19.91■□□□□ 0.78
CLIP3Q96DZ5 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
CLIP3Q96DZ5 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
CLIP3Q96DZ5 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLIP3Q96DZ5 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLIP3Q96DZ5 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLIP3Q96DZ5 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLIP3Q96DZ5 GUSBP6-202ENST00000438529 1198 ntBASIC19.91■□□□□ 0.78
CLIP3Q96DZ5 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CLIP3Q96DZ5 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.91■□□□□ 0.78
CLIP3Q96DZ5 AC142086.2-201ENST00000569753 217 ntBASIC19.91■□□□□ 0.78
CLIP3Q96DZ5 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.91■□□□□ 0.78
CLIP3Q96DZ5 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.91■□□□□ 0.78
CLIP3Q96DZ5 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.91■□□□□ 0.78
CLIP3Q96DZ5 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLIP3Q96DZ5 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.91■□□□□ 0.78
CLIP3Q96DZ5 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLIP3Q96DZ5 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
CLIP3Q96DZ5 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLIP3Q96DZ5 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.9■□□□□ 0.78
CLIP3Q96DZ5 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLIP3Q96DZ5 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
CLIP3Q96DZ5 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLIP3Q96DZ5 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.9■□□□□ 0.78
CLIP3Q96DZ5 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CLIP3Q96DZ5 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CLIP3Q96DZ5 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CLIP3Q96DZ5 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.9■□□□□ 0.78
CLIP3Q96DZ5 AL138781.1-201ENST00000566567 1274 ntBASIC19.9■□□□□ 0.78
CLIP3Q96DZ5 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLIP3Q96DZ5 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.9■□□□□ 0.78
CLIP3Q96DZ5 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLIP3Q96DZ5 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLIP3Q96DZ5 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.9■□□□□ 0.78
CLIP3Q96DZ5 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CLIP3Q96DZ5 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
CLIP3Q96DZ5 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.9■□□□□ 0.78
CLIP3Q96DZ5 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLIP3Q96DZ5 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.9■□□□□ 0.78
CLIP3Q96DZ5 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CLIP3Q96DZ5 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLIP3Q96DZ5 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.9■□□□□ 0.78
CLIP3Q96DZ5 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CLIP3Q96DZ5 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
CLIP3Q96DZ5 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLIP3Q96DZ5 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLIP3Q96DZ5 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLIP3Q96DZ5 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLIP3Q96DZ5 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
CLIP3Q96DZ5 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
CLIP3Q96DZ5 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLIP3Q96DZ5 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.89■□□□□ 0.77
CLIP3Q96DZ5 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CLIP3Q96DZ5 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.89■□□□□ 0.77
CLIP3Q96DZ5 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.89■□□□□ 0.77
CLIP3Q96DZ5 RBM17P2-201ENST00000616397 1405 ntBASIC19.89■□□□□ 0.77
CLIP3Q96DZ5 OR10C1-204ENST00000622521 1039 ntBASIC19.89■□□□□ 0.77
CLIP3Q96DZ5 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
CLIP3Q96DZ5 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CLIP3Q96DZ5 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLIP3Q96DZ5 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLIP3Q96DZ5 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLIP3Q96DZ5 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.88■□□□□ 0.77
CLIP3Q96DZ5 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.88■□□□□ 0.77
CLIP3Q96DZ5 MKRN4P-201ENST00000444706 1521 ntBASIC19.88■□□□□ 0.77
CLIP3Q96DZ5 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLIP3Q96DZ5 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.88■□□□□ 0.77
CLIP3Q96DZ5 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.88■□□□□ 0.77
CLIP3Q96DZ5 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLIP3Q96DZ5 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
CLIP3Q96DZ5 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLIP3Q96DZ5 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLIP3Q96DZ5 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLIP3Q96DZ5 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CLIP3Q96DZ5 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
CLIP3Q96DZ5 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.87■□□□□ 0.77
CLIP3Q96DZ5 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CLIP3Q96DZ5 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
CLIP3Q96DZ5 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLIP3Q96DZ5 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CLIP3Q96DZ5 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLIP3Q96DZ5 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CLIP3Q96DZ5 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLIP3Q96DZ5 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLIP3Q96DZ5 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
CLIP3Q96DZ5 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.87■□□□□ 0.77
CLIP3Q96DZ5 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.87■□□□□ 0.77
CLIP3Q96DZ5 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.87■□□□□ 0.77
CLIP3Q96DZ5 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.87■□□□□ 0.77
CLIP3Q96DZ5 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms