Protein–RNA interactions for Protein: Q96DD0

LRRC39, Leucine-rich repeat-containing protein 39, humanhuman

Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC39Q96DD0 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LRRC39Q96DD0 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.95■□□□□ 0.94
LRRC39Q96DD0 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.95■□□□□ 0.94
LRRC39Q96DD0 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.95■□□□□ 0.94
LRRC39Q96DD0 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.95■□□□□ 0.94
LRRC39Q96DD0 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.95■□□□□ 0.94
LRRC39Q96DD0 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LRRC39Q96DD0 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LRRC39Q96DD0 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LRRC39Q96DD0 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
LRRC39Q96DD0 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LRRC39Q96DD0 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.94■□□□□ 0.94
LRRC39Q96DD0 AC008175.2-201ENST00000612840 297 ntBASIC20.94■□□□□ 0.94
LRRC39Q96DD0 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
LRRC39Q96DD0 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LRRC39Q96DD0 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
LRRC39Q96DD0 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
LRRC39Q96DD0 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LRRC39Q96DD0 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
LRRC39Q96DD0 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
LRRC39Q96DD0 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
LRRC39Q96DD0 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
LRRC39Q96DD0 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LRRC39Q96DD0 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
LRRC39Q96DD0 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.93■□□□□ 0.94
LRRC39Q96DD0 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LRRC39Q96DD0 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
LRRC39Q96DD0 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
LRRC39Q96DD0 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.93■□□□□ 0.94
LRRC39Q96DD0 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
LRRC39Q96DD0 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LRRC39Q96DD0 AL358852.1-201ENST00000623174 1268 ntBASIC20.93■□□□□ 0.94
LRRC39Q96DD0 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
LRRC39Q96DD0 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LRRC39Q96DD0 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LRRC39Q96DD0 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRRC39Q96DD0 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.92■□□□□ 0.94
LRRC39Q96DD0 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRRC39Q96DD0 FP700111.2-201ENST00000619190 1892 ntBASIC20.92■□□□□ 0.94
LRRC39Q96DD0 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LRRC39Q96DD0 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRRC39Q96DD0 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRRC39Q96DD0 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRRC39Q96DD0 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LRRC39Q96DD0 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LRRC39Q96DD0 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRRC39Q96DD0 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRRC39Q96DD0 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LRRC39Q96DD0 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRRC39Q96DD0 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRRC39Q96DD0 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.92■□□□□ 0.94
LRRC39Q96DD0 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRRC39Q96DD0 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
LRRC39Q96DD0 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
LRRC39Q96DD0 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.91■□□□□ 0.94
LRRC39Q96DD0 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
LRRC39Q96DD0 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
LRRC39Q96DD0 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
LRRC39Q96DD0 SUDS3P1-201ENST00000505831 966 ntBASIC20.91■□□□□ 0.94
LRRC39Q96DD0 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.91■□□□□ 0.94
LRRC39Q96DD0 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
LRRC39Q96DD0 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LRRC39Q96DD0 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LRRC39Q96DD0 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LRRC39Q96DD0 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LRRC39Q96DD0 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
LRRC39Q96DD0 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.9■□□□□ 0.94
LRRC39Q96DD0 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LRRC39Q96DD0 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
LRRC39Q96DD0 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.9■□□□□ 0.94
LRRC39Q96DD0 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LRRC39Q96DD0 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LRRC39Q96DD0 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.9■□□□□ 0.94
LRRC39Q96DD0 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
LRRC39Q96DD0 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LRRC39Q96DD0 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.9■□□□□ 0.94
LRRC39Q96DD0 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.9■□□□□ 0.94
LRRC39Q96DD0 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.9■□□□□ 0.94
LRRC39Q96DD0 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.9■□□□□ 0.94
LRRC39Q96DD0 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.9■□□□□ 0.94
LRRC39Q96DD0 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LRRC39Q96DD0 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LRRC39Q96DD0 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LRRC39Q96DD0 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LRRC39Q96DD0 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.9■□□□□ 0.94
LRRC39Q96DD0 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
LRRC39Q96DD0 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LRRC39Q96DD0 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
LRRC39Q96DD0 AL162377.1-201ENST00000618844 1793 ntBASIC20.9■□□□□ 0.94
LRRC39Q96DD0 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.89■□□□□ 0.94
LRRC39Q96DD0 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.89■□□□□ 0.94
LRRC39Q96DD0 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
LRRC39Q96DD0 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.89■□□□□ 0.94
LRRC39Q96DD0 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.89■□□□□ 0.94
LRRC39Q96DD0 KRT87P-202ENST00000534226 1464 ntBASIC20.89■□□□□ 0.94
LRRC39Q96DD0 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
LRRC39Q96DD0 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
LRRC39Q96DD0 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LRRC39Q96DD0 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LRRC39Q96DD0 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms