Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21.21■□□□□ 0.99
SKA1Q96BD8 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SKA1Q96BD8 MAZ-216ENST00000616501 991 ntTSL 5 BASIC21.21■□□□□ 0.99
SKA1Q96BD8 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.21■□□□□ 0.99
SKA1Q96BD8 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SKA1Q96BD8 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SKA1Q96BD8 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SKA1Q96BD8 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.21■□□□□ 0.99
SKA1Q96BD8 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SKA1Q96BD8 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
SKA1Q96BD8 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.2■□□□□ 0.99
SKA1Q96BD8 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.99
SKA1Q96BD8 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SKA1Q96BD8 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC21.2■□□□□ 0.98
SKA1Q96BD8 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
SKA1Q96BD8 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC21.2■□□□□ 0.98
SKA1Q96BD8 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.2■□□□□ 0.98
SKA1Q96BD8 AC138907.5-202ENST00000569484 235 ntBASIC21.2■□□□□ 0.98
SKA1Q96BD8 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21.2■□□□□ 0.98
SKA1Q96BD8 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.2■□□□□ 0.98
SKA1Q96BD8 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.2■□□□□ 0.98
SKA1Q96BD8 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
SKA1Q96BD8 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SKA1Q96BD8 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SKA1Q96BD8 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
SKA1Q96BD8 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SKA1Q96BD8 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SKA1Q96BD8 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
SKA1Q96BD8 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
SKA1Q96BD8 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SKA1Q96BD8 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
SKA1Q96BD8 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SKA1Q96BD8 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SKA1Q96BD8 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC21.19■□□□□ 0.98
SKA1Q96BD8 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SKA1Q96BD8 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC21.19■□□□□ 0.98
SKA1Q96BD8 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.19■□□□□ 0.98
SKA1Q96BD8 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
SKA1Q96BD8 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SKA1Q96BD8 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
SKA1Q96BD8 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.19■□□□□ 0.98
SKA1Q96BD8 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.19■□□□□ 0.98
SKA1Q96BD8 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
SKA1Q96BD8 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SKA1Q96BD8 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SKA1Q96BD8 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SKA1Q96BD8 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SKA1Q96BD8 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SKA1Q96BD8 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SKA1Q96BD8 TSPY6P-201ENST00000448518 926 ntBASIC21.18■□□□□ 0.98
SKA1Q96BD8 AC010141.2-201ENST00000452426 721 ntBASIC21.18■□□□□ 0.98
SKA1Q96BD8 OAS3-207ENST00000551007 998 ntTSL 2 BASIC21.18■□□□□ 0.98
SKA1Q96BD8 AC142086.2-201ENST00000569753 217 ntBASIC21.18■□□□□ 0.98
SKA1Q96BD8 PFKL-212ENST00000628044 129 ntTSL 3 BASIC21.18■□□□□ 0.98
SKA1Q96BD8 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
SKA1Q96BD8 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
SKA1Q96BD8 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SKA1Q96BD8 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SKA1Q96BD8 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SKA1Q96BD8 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
SKA1Q96BD8 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
SKA1Q96BD8 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
SKA1Q96BD8 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SKA1Q96BD8 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC21.17■□□□□ 0.98
SKA1Q96BD8 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.17■□□□□ 0.98
SKA1Q96BD8 CD99P1-205ENST00000527459 561 ntBASIC21.17■□□□□ 0.98
SKA1Q96BD8 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.17■□□□□ 0.98
SKA1Q96BD8 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.17■□□□□ 0.98
SKA1Q96BD8 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SKA1Q96BD8 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.17■□□□□ 0.98
SKA1Q96BD8 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SKA1Q96BD8 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SKA1Q96BD8 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SKA1Q96BD8 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.16■□□□□ 0.98
SKA1Q96BD8 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SKA1Q96BD8 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SKA1Q96BD8 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SKA1Q96BD8 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SKA1Q96BD8 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SKA1Q96BD8 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
SKA1Q96BD8 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.16■□□□□ 0.98
SKA1Q96BD8 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC21.16■□□□□ 0.98
SKA1Q96BD8 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SKA1Q96BD8 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SKA1Q96BD8 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SKA1Q96BD8 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
SKA1Q96BD8 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SKA1Q96BD8 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SKA1Q96BD8 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SKA1Q96BD8 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SKA1Q96BD8 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SKA1Q96BD8 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.15■□□□□ 0.98
SKA1Q96BD8 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SKA1Q96BD8 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SKA1Q96BD8 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SKA1Q96BD8 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SKA1Q96BD8 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC21.15■□□□□ 0.98
SKA1Q96BD8 APTR-205ENST00000447009 902 ntTSL 2 BASIC21.15■□□□□ 0.98
SKA1Q96BD8 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SKA1Q96BD8 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms