Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC24.81■■□□□ 1.56
SMC1BQ8NDV3 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC24.81■■□□□ 1.56
SMC1BQ8NDV3 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC24.81■■□□□ 1.56
SMC1BQ8NDV3 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC24.81■■□□□ 1.56
SMC1BQ8NDV3 CFL2-205ENST00000555765 632 ntTSL 2 BASIC24.81■■□□□ 1.56
SMC1BQ8NDV3 DUT-205ENST00000558813 769 ntTSL 2 BASIC24.81■■□□□ 1.56
SMC1BQ8NDV3 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
SMC1BQ8NDV3 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SMC1BQ8NDV3 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
SMC1BQ8NDV3 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC24.81■■□□□ 1.56
SMC1BQ8NDV3 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC24.81■■□□□ 1.56
SMC1BQ8NDV3 AC073508.3-201ENST00000619697 1419 ntBASIC24.8■■□□□ 1.56
SMC1BQ8NDV3 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
SMC1BQ8NDV3 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC24.8■■□□□ 1.56
SMC1BQ8NDV3 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
SMC1BQ8NDV3 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC24.8■■□□□ 1.56
SMC1BQ8NDV3 GGT1-206ENST00000404223 952 ntTSL 2 BASIC24.8■■□□□ 1.56
SMC1BQ8NDV3 UPK3BP1-201ENST00000428678 509 ntBASIC24.8■■□□□ 1.56
SMC1BQ8NDV3 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC24.8■■□□□ 1.56
SMC1BQ8NDV3 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC24.8■■□□□ 1.56
SMC1BQ8NDV3 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
SMC1BQ8NDV3 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
SMC1BQ8NDV3 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC24.8■■□□□ 1.56
SMC1BQ8NDV3 GLDC-219ENST00000640208 420 ntTSL 2 BASIC24.8■■□□□ 1.56
SMC1BQ8NDV3 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
SMC1BQ8NDV3 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC24.8■■□□□ 1.56
SMC1BQ8NDV3 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC24.8■■□□□ 1.56
SMC1BQ8NDV3 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
SMC1BQ8NDV3 KRT8P9-201ENST00000558927 1449 ntBASIC24.79■■□□□ 1.56
SMC1BQ8NDV3 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC24.79■■□□□ 1.56
SMC1BQ8NDV3 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
SMC1BQ8NDV3 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
SMC1BQ8NDV3 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
SMC1BQ8NDV3 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
SMC1BQ8NDV3 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC24.79■■□□□ 1.56
SMC1BQ8NDV3 TOLLIP-AS1-201ENST00000530897 939 ntBASIC24.79■■□□□ 1.56
SMC1BQ8NDV3 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC24.79■■□□□ 1.56
SMC1BQ8NDV3 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
SMC1BQ8NDV3 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
SMC1BQ8NDV3 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
SMC1BQ8NDV3 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC24.78■■□□□ 1.56
SMC1BQ8NDV3 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
SMC1BQ8NDV3 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
SMC1BQ8NDV3 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC24.78■■□□□ 1.56
SMC1BQ8NDV3 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC24.78■■□□□ 1.56
SMC1BQ8NDV3 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
SMC1BQ8NDV3 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
SMC1BQ8NDV3 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
SMC1BQ8NDV3 AC104076.2-201ENST00000448912 469 ntBASIC24.78■■□□□ 1.56
SMC1BQ8NDV3 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC24.78■■□□□ 1.56
SMC1BQ8NDV3 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC24.78■■□□□ 1.56
SMC1BQ8NDV3 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
SMC1BQ8NDV3 DECR2-212ENST00000627716 352 ntTSL 2 BASIC24.78■■□□□ 1.56
SMC1BQ8NDV3 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
SMC1BQ8NDV3 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
SMC1BQ8NDV3 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
SMC1BQ8NDV3 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
SMC1BQ8NDV3 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
SMC1BQ8NDV3 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC24.77■■□□□ 1.56
SMC1BQ8NDV3 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC24.77■■□□□ 1.56
SMC1BQ8NDV3 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
SMC1BQ8NDV3 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC24.77■■□□□ 1.56
SMC1BQ8NDV3 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC24.77■■□□□ 1.56
SMC1BQ8NDV3 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC24.77■■□□□ 1.56
SMC1BQ8NDV3 METTL23-204ENST00000586752 904 ntTSL 2 BASIC24.77■■□□□ 1.56
SMC1BQ8NDV3 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC24.77■■□□□ 1.56
SMC1BQ8NDV3 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
SMC1BQ8NDV3 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
SMC1BQ8NDV3 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
SMC1BQ8NDV3 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
SMC1BQ8NDV3 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC24.76■■□□□ 1.55
SMC1BQ8NDV3 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC24.76■■□□□ 1.55
SMC1BQ8NDV3 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC24.76■■□□□ 1.55
SMC1BQ8NDV3 AC245052.3-201ENST00000450182 901 ntBASIC24.76■■□□□ 1.55
SMC1BQ8NDV3 RBM17P1-201ENST00000453646 1190 ntBASIC24.76■■□□□ 1.55
SMC1BQ8NDV3 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC24.76■■□□□ 1.55
SMC1BQ8NDV3 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC24.76■■□□□ 1.55
SMC1BQ8NDV3 AF186192.3-201ENST00000583427 947 ntBASIC24.76■■□□□ 1.55
SMC1BQ8NDV3 RPS15-203ENST00000586096 570 ntTSL 2 BASIC24.76■■□□□ 1.55
SMC1BQ8NDV3 AC006557.6-201ENST00000623071 864 ntBASIC24.76■■□□□ 1.55
SMC1BQ8NDV3 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC24.76■■□□□ 1.55
SMC1BQ8NDV3 KRT18P22-201ENST00000402024 1347 ntBASIC24.76■■□□□ 1.55
SMC1BQ8NDV3 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
SMC1BQ8NDV3 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
SMC1BQ8NDV3 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
SMC1BQ8NDV3 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC24.76■■□□□ 1.55
SMC1BQ8NDV3 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
SMC1BQ8NDV3 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC24.75■■□□□ 1.55
SMC1BQ8NDV3 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC24.75■■□□□ 1.55
SMC1BQ8NDV3 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC24.75■■□□□ 1.55
SMC1BQ8NDV3 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
SMC1BQ8NDV3 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
SMC1BQ8NDV3 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
SMC1BQ8NDV3 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC24.75■■□□□ 1.55
SMC1BQ8NDV3 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC24.75■■□□□ 1.55
SMC1BQ8NDV3 NMU-205ENST00000511469 756 ntTSL 3 BASIC24.75■■□□□ 1.55
SMC1BQ8NDV3 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC24.75■■□□□ 1.55
SMC1BQ8NDV3 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC24.75■■□□□ 1.55
SMC1BQ8NDV3 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC24.75■■□□□ 1.55
SMC1BQ8NDV3 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms