Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC21.34■■□□□ 1.01
SLC44A3Q8N4M1 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
SLC44A3Q8N4M1 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
SLC44A3Q8N4M1 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SLC44A3Q8N4M1 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SLC44A3Q8N4M1 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SLC44A3Q8N4M1 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SLC44A3Q8N4M1 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
SLC44A3Q8N4M1 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SLC44A3Q8N4M1 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SLC44A3Q8N4M1 CYP21A1P-202ENST00000354927 1481 ntBASIC21.33■■□□□ 1.01
SLC44A3Q8N4M1 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC21.33■■□□□ 1.01
SLC44A3Q8N4M1 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SLC44A3Q8N4M1 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
SLC44A3Q8N4M1 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SLC44A3Q8N4M1 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SLC44A3Q8N4M1 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SLC44A3Q8N4M1 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SLC44A3Q8N4M1 TSPY7P-201ENST00000431358 1114 ntBASIC21.33■■□□□ 1.01
SLC44A3Q8N4M1 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC21.33■■□□□ 1.01
SLC44A3Q8N4M1 ABHD17AP6-201ENST00000458502 1044 ntBASIC21.33■■□□□ 1.01
SLC44A3Q8N4M1 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SLC44A3Q8N4M1 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC21.33■■□□□ 1.01
SLC44A3Q8N4M1 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
SLC44A3Q8N4M1 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
SLC44A3Q8N4M1 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.33■■□□□ 1
SLC44A3Q8N4M1 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC21.32■■□□□ 1
SLC44A3Q8N4M1 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC21.32■■□□□ 1
SLC44A3Q8N4M1 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SLC44A3Q8N4M1 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
SLC44A3Q8N4M1 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC21.32■■□□□ 1
SLC44A3Q8N4M1 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
SLC44A3Q8N4M1 PTPA-214ENST00000423100 988 ntTSL 2 BASIC21.32■■□□□ 1
SLC44A3Q8N4M1 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
SLC44A3Q8N4M1 TK2-204ENST00000525974 1178 ntTSL 2 BASIC21.32■■□□□ 1
SLC44A3Q8N4M1 REXO2-216ENST00000544196 452 ntTSL 3 BASIC21.32■■□□□ 1
SLC44A3Q8N4M1 MAX-217ENST00000557277 728 ntTSL 3 BASIC21.32■■□□□ 1
SLC44A3Q8N4M1 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
SLC44A3Q8N4M1 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC21.32■■□□□ 1
SLC44A3Q8N4M1 MTDHP1-201ENST00000605323 784 ntBASIC21.32■■□□□ 1
SLC44A3Q8N4M1 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.32■■□□□ 1
SLC44A3Q8N4M1 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC21.32■■□□□ 1
SLC44A3Q8N4M1 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC21.32■■□□□ 1
SLC44A3Q8N4M1 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC21.32■■□□□ 1
SLC44A3Q8N4M1 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SLC44A3Q8N4M1 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SLC44A3Q8N4M1 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SLC44A3Q8N4M1 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SLC44A3Q8N4M1 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
SLC44A3Q8N4M1 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SLC44A3Q8N4M1 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.31■■□□□ 1
SLC44A3Q8N4M1 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.31■■□□□ 1
SLC44A3Q8N4M1 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
SLC44A3Q8N4M1 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.31■■□□□ 1
SLC44A3Q8N4M1 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC21.31■■□□□ 1
SLC44A3Q8N4M1 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
SLC44A3Q8N4M1 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
SLC44A3Q8N4M1 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC21.31■■□□□ 1
SLC44A3Q8N4M1 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC21.31■■□□□ 1
SLC44A3Q8N4M1 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
SLC44A3Q8N4M1 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC21.31■■□□□ 1
SLC44A3Q8N4M1 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SLC44A3Q8N4M1 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC21.3■■□□□ 1
SLC44A3Q8N4M1 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC21.3■■□□□ 1
SLC44A3Q8N4M1 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC21.3■■□□□ 1
SLC44A3Q8N4M1 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
SLC44A3Q8N4M1 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SLC44A3Q8N4M1 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SLC44A3Q8N4M1 LY6E-205ENST00000519611 635 ntTSL 3 BASIC21.3■■□□□ 1
SLC44A3Q8N4M1 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC21.3■■□□□ 1
SLC44A3Q8N4M1 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC21.3■■□□□ 1
SLC44A3Q8N4M1 AC105020.6-201ENST00000621523 1217 ntBASIC21.3■■□□□ 1
SLC44A3Q8N4M1 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC21.3■■□□□ 1
SLC44A3Q8N4M1 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC21.3■■□□□ 1
SLC44A3Q8N4M1 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
SLC44A3Q8N4M1 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.3■■□□□ 1
SLC44A3Q8N4M1 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC21.3■■□□□ 1
SLC44A3Q8N4M1 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
SLC44A3Q8N4M1 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.29■■□□□ 1
SLC44A3Q8N4M1 AC026471.6-201ENST00000622954 1905 ntBASIC21.29■■□□□ 1
SLC44A3Q8N4M1 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.29■■□□□ 1
SLC44A3Q8N4M1 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SLC44A3Q8N4M1 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.29■■□□□ 1
SLC44A3Q8N4M1 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SLC44A3Q8N4M1 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SLC44A3Q8N4M1 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
SLC44A3Q8N4M1 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SLC44A3Q8N4M1 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC21.29■■□□□ 1
SLC44A3Q8N4M1 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC21.29■■□□□ 1
SLC44A3Q8N4M1 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC21.29■■□□□ 1
SLC44A3Q8N4M1 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC21.29■■□□□ 1
SLC44A3Q8N4M1 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC21.29■■□□□ 1
SLC44A3Q8N4M1 AC124016.1-201ENST00000609552 612 ntBASIC21.29■■□□□ 1
SLC44A3Q8N4M1 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SLC44A3Q8N4M1 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.29■■□□□ 1
SLC44A3Q8N4M1 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC21.29■■□□□ 1
SLC44A3Q8N4M1 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SLC44A3Q8N4M1 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC21.29■■□□□ 1
SLC44A3Q8N4M1 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC21.29■■□□□ 1
SLC44A3Q8N4M1 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms