Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 FEM1AP4-201ENST00000443167 1987 ntBASIC32.64■■■□□ 2.82
VPS8Q8N3P4 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
VPS8Q8N3P4 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
VPS8Q8N3P4 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
VPS8Q8N3P4 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC32.64■■■□□ 2.82
VPS8Q8N3P4 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC32.64■■■□□ 2.82
VPS8Q8N3P4 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC32.64■■■□□ 2.82
VPS8Q8N3P4 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
VPS8Q8N3P4 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC32.63■■■□□ 2.81
VPS8Q8N3P4 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC32.63■■■□□ 2.81
VPS8Q8N3P4 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC32.63■■■□□ 2.81
VPS8Q8N3P4 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC32.63■■■□□ 2.81
VPS8Q8N3P4 MYC-209ENST00000641252 345 ntBASIC32.63■■■□□ 2.81
VPS8Q8N3P4 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
VPS8Q8N3P4 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC32.63■■■□□ 2.81
VPS8Q8N3P4 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
VPS8Q8N3P4 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC32.63■■■□□ 2.81
VPS8Q8N3P4 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
VPS8Q8N3P4 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
VPS8Q8N3P4 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
VPS8Q8N3P4 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
VPS8Q8N3P4 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC32.62■■■□□ 2.81
VPS8Q8N3P4 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
VPS8Q8N3P4 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC32.62■■■□□ 2.81
VPS8Q8N3P4 CYP2T3P-201ENST00000601990 817 ntBASIC32.62■■■□□ 2.81
VPS8Q8N3P4 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC32.62■■■□□ 2.81
VPS8Q8N3P4 AL049796.1-201ENST00000565336 1766 ntBASIC32.62■■■□□ 2.81
VPS8Q8N3P4 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
VPS8Q8N3P4 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC32.62■■■□□ 2.81
VPS8Q8N3P4 KRT17P1-201ENST00000399211 1546 ntBASIC32.62■■■□□ 2.81
VPS8Q8N3P4 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
VPS8Q8N3P4 BX276092.2-201ENST00000417668 665 ntBASIC32.61■■■□□ 2.81
VPS8Q8N3P4 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
VPS8Q8N3P4 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC32.61■■■□□ 2.81
VPS8Q8N3P4 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
VPS8Q8N3P4 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC32.61■■■□□ 2.81
VPS8Q8N3P4 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
VPS8Q8N3P4 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC32.61■■■□□ 2.81
VPS8Q8N3P4 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
VPS8Q8N3P4 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
VPS8Q8N3P4 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC32.61■■■□□ 2.81
VPS8Q8N3P4 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
VPS8Q8N3P4 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC32.61■■■□□ 2.81
VPS8Q8N3P4 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC32.61■■■□□ 2.81
VPS8Q8N3P4 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC32.61■■■□□ 2.81
VPS8Q8N3P4 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
VPS8Q8N3P4 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC32.61■■■□□ 2.81
VPS8Q8N3P4 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC32.6■■■□□ 2.81
VPS8Q8N3P4 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC32.6■■■□□ 2.81
VPS8Q8N3P4 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC32.6■■■□□ 2.81
VPS8Q8N3P4 PPP1R14BP2-201ENST00000426284 444 ntBASIC32.6■■■□□ 2.81
VPS8Q8N3P4 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC32.6■■■□□ 2.81
VPS8Q8N3P4 AC083880.1-201ENST00000608266 535 ntBASIC32.6■■■□□ 2.81
VPS8Q8N3P4 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC32.6■■■□□ 2.81
VPS8Q8N3P4 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
VPS8Q8N3P4 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
VPS8Q8N3P4 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC32.59■■■□□ 2.81
VPS8Q8N3P4 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC32.59■■■□□ 2.81
VPS8Q8N3P4 AL355472.2-201ENST00000422958 438 ntBASIC32.59■■■□□ 2.81
VPS8Q8N3P4 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC32.59■■■□□ 2.81
VPS8Q8N3P4 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
VPS8Q8N3P4 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC32.59■■■□□ 2.81
VPS8Q8N3P4 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
VPS8Q8N3P4 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC32.58■■■□□ 2.81
VPS8Q8N3P4 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
VPS8Q8N3P4 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC32.58■■■□□ 2.81
VPS8Q8N3P4 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC32.58■■■□□ 2.81
VPS8Q8N3P4 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
VPS8Q8N3P4 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC32.58■■■□□ 2.81
VPS8Q8N3P4 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
VPS8Q8N3P4 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC32.58■■■□□ 2.81
VPS8Q8N3P4 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
VPS8Q8N3P4 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC32.58■■■□□ 2.81
VPS8Q8N3P4 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC32.57■■■□□ 2.8
VPS8Q8N3P4 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC32.57■■■□□ 2.8
VPS8Q8N3P4 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC32.57■■■□□ 2.8
VPS8Q8N3P4 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC32.57■■■□□ 2.8
VPS8Q8N3P4 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC32.57■■■□□ 2.8
VPS8Q8N3P4 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC32.57■■■□□ 2.8
VPS8Q8N3P4 AC087633.2-202ENST00000565166 1439 ntBASIC32.57■■■□□ 2.8
VPS8Q8N3P4 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC32.57■■■□□ 2.8
VPS8Q8N3P4 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC32.56■■■□□ 2.8
VPS8Q8N3P4 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC32.56■■■□□ 2.8
VPS8Q8N3P4 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
VPS8Q8N3P4 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
VPS8Q8N3P4 MCRIP2P1-201ENST00000394346 511 ntBASIC32.56■■■□□ 2.8
VPS8Q8N3P4 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC32.56■■■□□ 2.8
VPS8Q8N3P4 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
VPS8Q8N3P4 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC32.55■■■□□ 2.8
VPS8Q8N3P4 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
VPS8Q8N3P4 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
VPS8Q8N3P4 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC32.55■■■□□ 2.8
VPS8Q8N3P4 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC32.55■■■□□ 2.8
VPS8Q8N3P4 KLF13-207ENST00000560473 489 ntTSL 3 BASIC32.55■■■□□ 2.8
VPS8Q8N3P4 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC32.55■■■□□ 2.8
VPS8Q8N3P4 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
VPS8Q8N3P4 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
VPS8Q8N3P4 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
VPS8Q8N3P4 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC32.54■■■□□ 2.8
VPS8Q8N3P4 MIR4758-201ENST00000577688 71 ntBASIC32.54■■■□□ 2.8
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms