Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC25.4■■□□□ 1.66
USP48Q86UV5 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC25.4■■□□□ 1.66
USP48Q86UV5 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC25.4■■□□□ 1.66
USP48Q86UV5 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC25.4■■□□□ 1.66
USP48Q86UV5 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
USP48Q86UV5 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
USP48Q86UV5 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC25.39■■□□□ 1.66
USP48Q86UV5 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC25.39■■□□□ 1.66
USP48Q86UV5 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.66
USP48Q86UV5 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC25.39■■□□□ 1.66
USP48Q86UV5 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC25.39■■□□□ 1.66
USP48Q86UV5 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
USP48Q86UV5 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
USP48Q86UV5 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
USP48Q86UV5 RHOD-202ENST00000532559 538 ntTSL 3 BASIC25.39■■□□□ 1.66
USP48Q86UV5 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC25.39■■□□□ 1.66
USP48Q86UV5 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC25.39■■□□□ 1.66
USP48Q86UV5 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
USP48Q86UV5 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
USP48Q86UV5 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
USP48Q86UV5 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC25.39■■□□□ 1.65
USP48Q86UV5 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
USP48Q86UV5 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC25.39■■□□□ 1.65
USP48Q86UV5 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
USP48Q86UV5 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC25.38■■□□□ 1.65
USP48Q86UV5 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
USP48Q86UV5 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC25.38■■□□□ 1.65
USP48Q86UV5 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
USP48Q86UV5 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
USP48Q86UV5 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
USP48Q86UV5 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
USP48Q86UV5 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
USP48Q86UV5 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC25.38■■□□□ 1.65
USP48Q86UV5 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC25.38■■□□□ 1.65
USP48Q86UV5 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC25.38■■□□□ 1.65
USP48Q86UV5 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
USP48Q86UV5 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
USP48Q86UV5 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC25.38■■□□□ 1.65
USP48Q86UV5 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
USP48Q86UV5 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
USP48Q86UV5 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
USP48Q86UV5 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC25.38■■□□□ 1.65
USP48Q86UV5 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
USP48Q86UV5 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
USP48Q86UV5 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
USP48Q86UV5 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC25.37■■□□□ 1.65
USP48Q86UV5 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
USP48Q86UV5 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC25.37■■□□□ 1.65
USP48Q86UV5 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC25.37■■□□□ 1.65
USP48Q86UV5 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC25.37■■□□□ 1.65
USP48Q86UV5 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
USP48Q86UV5 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC25.37■■□□□ 1.65
USP48Q86UV5 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
USP48Q86UV5 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC25.37■■□□□ 1.65
USP48Q86UV5 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
USP48Q86UV5 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
USP48Q86UV5 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC25.37■■□□□ 1.65
USP48Q86UV5 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC25.37■■□□□ 1.65
USP48Q86UV5 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC25.37■■□□□ 1.65
USP48Q86UV5 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC25.37■■□□□ 1.65
USP48Q86UV5 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
USP48Q86UV5 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
USP48Q86UV5 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC25.37■■□□□ 1.65
USP48Q86UV5 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
USP48Q86UV5 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
USP48Q86UV5 MME-217ENST00000616757 1315 ntTSL 5 BASIC25.37■■□□□ 1.65
USP48Q86UV5 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
USP48Q86UV5 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC25.36■■□□□ 1.65
USP48Q86UV5 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC25.36■■□□□ 1.65
USP48Q86UV5 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC25.36■■□□□ 1.65
USP48Q86UV5 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
USP48Q86UV5 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC25.36■■□□□ 1.65
USP48Q86UV5 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
USP48Q86UV5 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC25.36■■□□□ 1.65
USP48Q86UV5 AP003097.1-201ENST00000530657 1135 ntBASIC25.36■■□□□ 1.65
USP48Q86UV5 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC25.36■■□□□ 1.65
USP48Q86UV5 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
USP48Q86UV5 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC25.36■■□□□ 1.65
USP48Q86UV5 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
USP48Q86UV5 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
USP48Q86UV5 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC25.36■■□□□ 1.65
USP48Q86UV5 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
USP48Q86UV5 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
USP48Q86UV5 AC010542.4-201ENST00000563151 1910 ntBASIC25.35■■□□□ 1.65
USP48Q86UV5 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC25.35■■□□□ 1.65
USP48Q86UV5 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
USP48Q86UV5 UBE2SP1-201ENST00000450587 669 ntBASIC25.35■■□□□ 1.65
USP48Q86UV5 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC25.35■■□□□ 1.65
USP48Q86UV5 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC25.35■■□□□ 1.65
USP48Q86UV5 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
USP48Q86UV5 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC25.35■■□□□ 1.65
USP48Q86UV5 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC25.35■■□□□ 1.65
USP48Q86UV5 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
USP48Q86UV5 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC25.35■■□□□ 1.65
USP48Q86UV5 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC25.34■■□□□ 1.65
USP48Q86UV5 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
USP48Q86UV5 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
USP48Q86UV5 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC25.34■■□□□ 1.65
USP48Q86UV5 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC25.34■■□□□ 1.65
USP48Q86UV5 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms