Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PRKDCP78527 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PRKDCP78527 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC15.25■□□□□ 0.03
PRKDCP78527 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PRKDCP78527 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC15.25■□□□□ 0.03
PRKDCP78527 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
PRKDCP78527 BX664615.1-201ENST00000443558 458 ntBASIC15.25■□□□□ 0.03
PRKDCP78527 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC15.25■□□□□ 0.03
PRKDCP78527 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC15.25■□□□□ 0.03
PRKDCP78527 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PRKDCP78527 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PRKDCP78527 AC104076.2-201ENST00000448912 469 ntBASIC15.24■□□□□ 0.03
PRKDCP78527 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC15.24■□□□□ 0.03
PRKDCP78527 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PRKDCP78527 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PRKDCP78527 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC15.24■□□□□ 0.03
PRKDCP78527 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PRKDCP78527 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC15.24■□□□□ 0.03
PRKDCP78527 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC15.24■□□□□ 0.03
PRKDCP78527 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
PRKDCP78527 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PRKDCP78527 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
PRKDCP78527 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PRKDCP78527 GPALPP1-207ENST00000611650 899 ntBASIC15.24■□□□□ 0.03
PRKDCP78527 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
PRKDCP78527 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PRKDCP78527 NUDT16P1-203ENST00000513809 620 ntBASIC15.24■□□□□ 0.03
PRKDCP78527 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC15.24■□□□□ 0.03
PRKDCP78527 AF186192.3-201ENST00000583427 947 ntBASIC15.24■□□□□ 0.03
PRKDCP78527 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PRKDCP78527 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
PRKDCP78527 AL137013.1-201ENST00000432946 1228 ntBASIC15.23■□□□□ 0.03
PRKDCP78527 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PRKDCP78527 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PRKDCP78527 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC15.23■□□□□ 0.03
PRKDCP78527 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC15.23■□□□□ 0.03
PRKDCP78527 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PRKDCP78527 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PRKDCP78527 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC15.23■□□□□ 0.03
PRKDCP78527 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC15.23■□□□□ 0.03
PRKDCP78527 AC120498.10-201ENST00000621827 505 ntBASIC15.23■□□□□ 0.03
PRKDCP78527 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PRKDCP78527 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PRKDCP78527 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PRKDCP78527 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PRKDCP78527 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
PRKDCP78527 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC15.23■□□□□ 0.03
PRKDCP78527 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC15.23■□□□□ 0.03
PRKDCP78527 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC15.23■□□□□ 0.03
PRKDCP78527 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC15.23■□□□□ 0.03
PRKDCP78527 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PRKDCP78527 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC15.23■□□□□ 0.03
PRKDCP78527 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PRKDCP78527 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC15.22■□□□□ 0.03
PRKDCP78527 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
PRKDCP78527 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
PRKDCP78527 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC15.22■□□□□ 0.03
PRKDCP78527 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PRKDCP78527 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC15.22■□□□□ 0.03
PRKDCP78527 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PRKDCP78527 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PRKDCP78527 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC15.22■□□□□ 0.03
PRKDCP78527 AC004812.2-201ENST00000611079 2094 ntBASIC15.22■□□□□ 0.03
PRKDCP78527 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PRKDCP78527 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PRKDCP78527 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PRKDCP78527 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC15.22■□□□□ 0.03
PRKDCP78527 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
PRKDCP78527 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PRKDCP78527 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
PRKDCP78527 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PRKDCP78527 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
PRKDCP78527 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC15.22■□□□□ 0.03
PRKDCP78527 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC15.22■□□□□ 0.03
PRKDCP78527 AC105020.6-201ENST00000621523 1217 ntBASIC15.22■□□□□ 0.03
PRKDCP78527 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PRKDCP78527 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PRKDCP78527 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PRKDCP78527 GGT1-206ENST00000404223 952 ntTSL 2 BASIC15.21■□□□□ 0.03
PRKDCP78527 AL034346.1-201ENST00000568244 1277 ntBASIC15.21■□□□□ 0.03
PRKDCP78527 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PRKDCP78527 AC120498.8-201ENST00000614275 531 ntBASIC15.21■□□□□ 0.03
PRKDCP78527 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PRKDCP78527 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC15.21■□□□□ 0.03
PRKDCP78527 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PRKDCP78527 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC15.21■□□□□ 0.03
PRKDCP78527 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
PRKDCP78527 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
PRKDCP78527 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PRKDCP78527 LINC01568-207ENST00000641790 1380 ntBASIC15.21■□□□□ 0.03
PRKDCP78527 AC008175.2-201ENST00000612840 297 ntBASIC15.21■□□□□ 0.03
PRKDCP78527 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PRKDCP78527 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
PRKDCP78527 AL450487.1-201ENST00000426799 995 ntBASIC15.21■□□□□ 0.02
PRKDCP78527 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC15.21■□□□□ 0.02
PRKDCP78527 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PRKDCP78527 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC15.2■□□□□ 0.02
PRKDCP78527 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PRKDCP78527 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC15.2■□□□□ 0.02
PRKDCP78527 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms